miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 102408 0.69 0.570468
Target:  5'- aCCGUGCCCA--CgGGCGGGGAcauccccgaguacgUgaacGCGCu -3'
miRNA:   3'- -GGCACGGGUucGgCCGCCUCU--------------A----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 102377 0.69 0.54403
Target:  5'- cCUG-GCCaccgcGCUGGUGGAGA-GCGCg -3'
miRNA:   3'- -GGCaCGGguu--CGGCCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 101246 0.66 0.750647
Target:  5'- gCGUGCUCGcGCUGGaCGGcGcgGaCGCg -3'
miRNA:   3'- gGCACGGGUuCGGCC-GCCuCuaC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 100757 0.67 0.692752
Target:  5'- gCGUGCagCCGGcGCaCGGCGGAGAUcuucgaccaggaGCGg -3'
miRNA:   3'- gGCACG--GGUU-CG-GCCGCCUCUA------------CGCg -5'
25699 3' -59.7 NC_005337.1 + 100535 0.7 0.496232
Target:  5'- gCUcUGCgCCAugcGCCGGCGGuucAUGCGCa -3'
miRNA:   3'- -GGcACG-GGUu--CGGCCGCCuc-UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 100201 0.67 0.672978
Target:  5'- uCCGcgGCCUGcucuacgacGGCCGGCGccgcGUGCGCg -3'
miRNA:   3'- -GGCa-CGGGU---------UCGGCCGCcuc-UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 100069 0.72 0.412949
Target:  5'- aCGUGgCCAAGCUGGaCuggagcaaggacugGGAGAaGCGCg -3'
miRNA:   3'- gGCACgGGUUCGGCC-G--------------CCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 99627 0.66 0.759998
Target:  5'- gUCGUGCgCGuGCgGGacaCGGAcGUGCGCg -3'
miRNA:   3'- -GGCACGgGUuCGgCC---GCCUcUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 99401 0.66 0.750647
Target:  5'- gCCGgugcUGCgCAccGCgGGCGGcGGGUGCGUg -3'
miRNA:   3'- -GGC----ACGgGUu-CGgCCGCC-UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 99161 0.75 0.255846
Target:  5'- aCUGggcGUCCGcGCCGcGCGGAcGAUGCGCg -3'
miRNA:   3'- -GGCa--CGGGUuCGGC-CGCCU-CUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 98124 0.67 0.66304
Target:  5'- aCCGUGaCCAGGCaccgCGGCGGcGGGUcCGUg -3'
miRNA:   3'- -GGCACgGGUUCG----GCCGCC-UCUAcGCG- -5'
25699 3' -59.7 NC_005337.1 + 97827 0.67 0.681896
Target:  5'- aCCGUGCguCCGcccgcgcagcugcAGCCGG-GuGAGgcGCGCg -3'
miRNA:   3'- -GGCACG--GGU-------------UCGGCCgC-CUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 97795 0.69 0.573426
Target:  5'- gCCGcGgCCAGGCCGuGCGGcAGGUG-GUg -3'
miRNA:   3'- -GGCaCgGGUUCGGC-CGCC-UCUACgCG- -5'
25699 3' -59.7 NC_005337.1 + 97517 0.67 0.682885
Target:  5'- gCGUGCacaCCGuGCCcGUGGAGAUGCcggGCu -3'
miRNA:   3'- gGCACG---GGUuCGGcCGCCUCUACG---CG- -5'
25699 3' -59.7 NC_005337.1 + 97089 0.73 0.334424
Target:  5'- gCGUGCCCAAccgcaugcuggugccGCaguggcgcucggcggUGGCGGAGcUGCGCg -3'
miRNA:   3'- gGCACGGGUU---------------CG---------------GCCGCCUCuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 96380 0.77 0.192119
Target:  5'- cCCGgucgcGCCCGAGCaggCGGCGGAGGacgaggugGCGCa -3'
miRNA:   3'- -GGCa----CGGGUUCG---GCCGCCUCUa-------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 96092 0.67 0.702571
Target:  5'- aCGggGCaCgCGGGCgCGGCGGAGGacaUGCGg -3'
miRNA:   3'- gGCa-CG-G-GUUCG-GCCGCCUCU---ACGCg -5'
25699 3' -59.7 NC_005337.1 + 95903 0.66 0.759998
Target:  5'- cUCGUGCUCGcGGCgaCGGCGGccgcGCGCg -3'
miRNA:   3'- -GGCACGGGU-UCG--GCCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 94842 0.68 0.653078
Target:  5'- aCCGagcgcgGCCCGAGCgGGCGccc--GCGCg -3'
miRNA:   3'- -GGCa-----CGGGUUCGgCCGCcucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 93466 0.71 0.468476
Target:  5'- ---cGCCC--GCCGGCGGGaacgugguGGUGCGCc -3'
miRNA:   3'- ggcaCGGGuuCGGCCGCCU--------CUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.