miRNA display CGI


Results 61 - 80 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 91850 0.68 0.603178
Target:  5'- cCCGgaagcucacGCCgAAGCCGGCGcacagcGAGGccGCGCg -3'
miRNA:   3'- -GGCa--------CGGgUUCGGCCGC------CUCUa-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 91715 0.66 0.72203
Target:  5'- aCC-UGCa--GGCCGGUGGGGuaGCGCa -3'
miRNA:   3'- -GGcACGgguUCGGCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 91155 0.67 0.66304
Target:  5'- -aGUaGCUCAcGuuGGCGGAGAUGUcCa -3'
miRNA:   3'- ggCA-CGGGUuCggCCGCCUCUACGcG- -5'
25699 3' -59.7 NC_005337.1 + 90281 0.75 0.276811
Target:  5'- aCCGUGCUCAcgaacuucuccaugcGGUCGGUGGAGGUaaacagcaGUGCg -3'
miRNA:   3'- -GGCACGGGU---------------UCGGCCGCCUCUA--------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 89921 0.67 0.681896
Target:  5'- gCGUcGCCCcacuccucacagaGGGCCGcGCGGAuaaagGCGCg -3'
miRNA:   3'- gGCA-CGGG-------------UUCGGC-CGCCUcua--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 89871 0.66 0.72203
Target:  5'- uCCGaGCgCGcGCUGGCgauGGAGA-GCGCg -3'
miRNA:   3'- -GGCaCGgGUuCGGCCG---CCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 89227 0.66 0.72203
Target:  5'- gCCGgcGCCC-AGCUuGCGGAGcaucGUGCGg -3'
miRNA:   3'- -GGCa-CGGGuUCGGcCGCCUC----UACGCg -5'
25699 3' -59.7 NC_005337.1 + 88922 0.72 0.385531
Target:  5'- aCCGUGCUgaccgucgucugCGAGCUcgcggaccgcgcggaGGCGGAGG-GCGCg -3'
miRNA:   3'- -GGCACGG------------GUUCGG---------------CCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 88257 0.69 0.56358
Target:  5'- gCGUGCCgGcgcGCCGGCGGGcGccGCGg -3'
miRNA:   3'- gGCACGGgUu--CGGCCGCCU-CuaCGCg -5'
25699 3' -59.7 NC_005337.1 + 87934 0.67 0.712333
Target:  5'- uUCGUGCac--GCCGGCGGcagcccGGAccuccUGCGCc -3'
miRNA:   3'- -GGCACGgguuCGGCCGCC------UCU-----ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 87221 0.69 0.56358
Target:  5'- aCGUGCgaCUucGCCaGGaugauGGAGAUGCGCu -3'
miRNA:   3'- gGCACG--GGuuCGG-CCg----CCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 86629 0.68 0.643099
Target:  5'- -aGUGCaCCAcguAGuacCCGGCGGuGgcGCGCa -3'
miRNA:   3'- ggCACG-GGU---UC---GGCCGCCuCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 86452 0.68 0.653078
Target:  5'- gUCGUcGCagAGGCCGGCGucGAaGCGCg -3'
miRNA:   3'- -GGCA-CGggUUCGGCCGCcuCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 85396 0.72 0.424076
Target:  5'- gCGUGgUCuGGCCgccgGGCGGGGAcGCGCa -3'
miRNA:   3'- gGCACgGGuUCGG----CCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 84029 0.66 0.750647
Target:  5'- gCG-GCgggaCAcaCCGGCGGAGgcGCGCa -3'
miRNA:   3'- gGCaCGg---GUucGGCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 83925 0.7 0.486894
Target:  5'- gCUG-GCCCAGGCuCGGCcGGGcgGCGg -3'
miRNA:   3'- -GGCaCGGGUUCG-GCCGcCUCuaCGCg -5'
25699 3' -59.7 NC_005337.1 + 83910 0.74 0.307326
Target:  5'- cCCGUGCCCGGgcccgucuccGCCGGCgugggguucuuGGAGAaGCGg -3'
miRNA:   3'- -GGCACGGGUU----------CGGCCG-----------CCUCUaCGCg -5'
25699 3' -59.7 NC_005337.1 + 81495 0.66 0.740245
Target:  5'- uCCGUGUUCAcgcgguuGGaCCGGauauCGGAGAUGaGCa -3'
miRNA:   3'- -GGCACGGGU-------UC-GGCC----GCCUCUACgCG- -5'
25699 3' -59.7 NC_005337.1 + 81024 0.76 0.221514
Target:  5'- ---aGUCCGGGCguggagaUGGCGGGGAUGCGCa -3'
miRNA:   3'- ggcaCGGGUUCG-------GCCGCCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 80525 0.69 0.56358
Target:  5'- gCCGagGCCCGGGgC-GCGGAGAUGUcCa -3'
miRNA:   3'- -GGCa-CGGGUUCgGcCGCCUCUACGcG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.