miRNA display CGI


Results 81 - 100 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 80101 0.7 0.496232
Target:  5'- gCGUGCCUgaagccGAGCCaGGCGGucguGGAcaccggGCGCg -3'
miRNA:   3'- gGCACGGG------UUCGG-CCGCC----UCUa-----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 80032 0.68 0.653078
Target:  5'- cCCG-GCCCGGacgcGCCGGacgaGGAGAUcuaCGCc -3'
miRNA:   3'- -GGCaCGGGUU----CGGCCg---CCUCUAc--GCG- -5'
25699 3' -59.7 NC_005337.1 + 78299 0.69 0.573426
Target:  5'- gCCGUaCuCCAGGCUGG-GGAGGUGgccCGCg -3'
miRNA:   3'- -GGCAcG-GGUUCGGCCgCCUCUAC---GCG- -5'
25699 3' -59.7 NC_005337.1 + 77866 0.67 0.699631
Target:  5'- -gGUGCCCAgcagguacaucAGCuCGGUGGGGuucaccuuguaccccGCGCg -3'
miRNA:   3'- ggCACGGGU-----------UCG-GCCGCCUCua-------------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 77409 0.71 0.459401
Target:  5'- uUCGUcGCCaugcGCUGGCGGuGcAUGCGCa -3'
miRNA:   3'- -GGCA-CGGguu-CGGCCGCCuC-UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 77381 0.69 0.583312
Target:  5'- gCgGUGCCgCAacaccAGCCGGCgccgcgggaGGuGGAUGUGCg -3'
miRNA:   3'- -GgCACGG-GU-----UCGGCCG---------CC-UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 77242 0.67 0.679917
Target:  5'- aCGcGCCCAgcagccggacguccAGCCGGCGG-GAguacGUGUc -3'
miRNA:   3'- gGCaCGGGU--------------UCGGCCGCCuCUa---CGCG- -5'
25699 3' -59.7 NC_005337.1 + 77145 0.66 0.740245
Target:  5'- aCGgcGUCCAGGCUGGCGGcgaccacgGGGUacugccgGCGCc -3'
miRNA:   3'- gGCa-CGGGUUCGGCCGCC--------UCUA-------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 77024 0.68 0.633113
Target:  5'- cCCGUGCCCGAaCCaGCGccGGUGCa- -3'
miRNA:   3'- -GGCACGGGUUcGGcCGCcuCUACGcg -5'
25699 3' -59.7 NC_005337.1 + 76811 0.67 0.66304
Target:  5'- -gGUGCgCGcGCUugaugcgcaGGCGGuGGAUGCGCa -3'
miRNA:   3'- ggCACGgGUuCGG---------CCGCC-UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 76010 0.66 0.7544
Target:  5'- gCCGUGCgCCGGuacacgcggaagaccGCCGcGcCGGAcuUGCGCu -3'
miRNA:   3'- -GGCACG-GGUU---------------CGGC-C-GCCUcuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 75557 0.66 0.731654
Target:  5'- gCCGgcgcGCCCAucuaccuGCCGaCGGcGAUGaCGCg -3'
miRNA:   3'- -GGCa---CGGGUu------CGGCcGCCuCUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 74883 0.67 0.682885
Target:  5'- cCUGcGCCCGAccgaggacGCCGGgGGcguGAUGgCGCg -3'
miRNA:   3'- -GGCaCGGGUU--------CGGCCgCCu--CUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 74508 0.69 0.587277
Target:  5'- gCCG-GCuguccuuuuuguccaCCGAGCUcGCGGAGAcGCGCu -3'
miRNA:   3'- -GGCaCG---------------GGUUCGGcCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 73441 0.67 0.672978
Target:  5'- aUCGUGCgCCAGuucuucGCgCGGCGGuGccGCGUg -3'
miRNA:   3'- -GGCACG-GGUU------CG-GCCGCCuCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 71543 0.67 0.660053
Target:  5'- gUCGUGCCCAGcaacgagacgcaccGCCGGaugauGGAGA--CGCu -3'
miRNA:   3'- -GGCACGGGUU--------------CGGCCg----CCUCUacGCG- -5'
25699 3' -59.7 NC_005337.1 + 71271 0.66 0.731654
Target:  5'- aCGcGCUCAugcGCCGcGUGGcgcuGGUGCGCu -3'
miRNA:   3'- gGCaCGGGUu--CGGC-CGCCu---CUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 68489 0.72 0.38229
Target:  5'- aCCGgGCgCCGcgcuGCUGGCGGccguGGGUGCGCc -3'
miRNA:   3'- -GGCaCG-GGUu---CGGCCGCC----UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 68338 0.76 0.249933
Target:  5'- gCGUGCCCGuGCCGGaGGAcg-GCGCg -3'
miRNA:   3'- gGCACGGGUuCGGCCgCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 68290 0.7 0.515141
Target:  5'- gCG-GCC--GGCCGGCGGcguGGAcGCGCg -3'
miRNA:   3'- gGCaCGGguUCGGCCGCC---UCUaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.