miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 67896 0.7 0.515141
Target:  5'- gCGUGCUCGaagcgguggAGCCGGaCGGGaGUGcCGCg -3'
miRNA:   3'- gGCACGGGU---------UCGGCC-GCCUcUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 58197 0.72 0.407033
Target:  5'- ---gGCCCGcguGGCCGaGCGGAaGAUGgGCg -3'
miRNA:   3'- ggcaCGGGU---UCGGC-CGCCU-CUACgCG- -5'
25699 3' -59.7 NC_005337.1 + 100069 0.72 0.412949
Target:  5'- aCGUGgCCAAGCUGGaCuggagcaaggacugGGAGAaGCGCg -3'
miRNA:   3'- gGCACgGGUUCGGCC-G--------------CCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 103002 0.71 0.450421
Target:  5'- aCGUGCCCGAGCgCGGCccgcAGGUGgGg -3'
miRNA:   3'- gGCACGGGUUCG-GCCGcc--UCUACgCg -5'
25699 3' -59.7 NC_005337.1 + 1418 0.71 0.459401
Target:  5'- gCGUGUUugucugggucugCGAGCgCGGCGGcgccgAGGUGCGCg -3'
miRNA:   3'- gGCACGG------------GUUCG-GCCGCC-----UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 128086 0.71 0.465744
Target:  5'- gCCGcGCCCGAGacCCGGagugcuaagcgaacUGGuGGUGCGCg -3'
miRNA:   3'- -GGCaCGGGUUC--GGCC--------------GCCuCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 45326 0.71 0.468476
Target:  5'- -gGUGCCCAccaAGaCCaGGCGGAucauGggGCGCg -3'
miRNA:   3'- ggCACGGGU---UC-GG-CCGCCU----CuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 132484 0.71 0.472131
Target:  5'- cCCGUGCggCGgcaggagggacuggcGGCCGGCGG-GAUGcCGCc -3'
miRNA:   3'- -GGCACGg-GU---------------UCGGCCGCCuCUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 83925 0.7 0.486894
Target:  5'- gCUG-GCCCAGGCuCGGCcGGGcgGCGg -3'
miRNA:   3'- -GGCaCGGGUUCG-GCCGcCUCuaCGCg -5'
25699 3' -59.7 NC_005337.1 + 67722 0.72 0.398674
Target:  5'- cCCGUcGUCCuccgGGaCCGGCGGcGcgGCGCg -3'
miRNA:   3'- -GGCA-CGGGu---UC-GGCCGCCuCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 88922 0.72 0.385531
Target:  5'- aCCGUGCUgaccgucgucugCGAGCUcgcggaccgcgcggaGGCGGAGG-GCGCg -3'
miRNA:   3'- -GGCACGG------------GUUCGG---------------CCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 68489 0.72 0.38229
Target:  5'- aCCGgGCgCCGcgcuGCUGGCGGccguGGGUGCGCc -3'
miRNA:   3'- -GGCaCG-GGUu---CGGCCGCC----UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 68338 0.76 0.249933
Target:  5'- gCGUGCCCGuGCCGGaGGAcg-GCGCg -3'
miRNA:   3'- gGCACGGGUuCGGCCgCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 115326 0.75 0.255846
Target:  5'- aCCGUGCUCGcgacgcccggcGGCgGGCGGAucUGCGUg -3'
miRNA:   3'- -GGCACGGGU-----------UCGgCCGCCUcuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 99161 0.75 0.255846
Target:  5'- aCUGggcGUCCGcGCCGcGCGGAcGAUGCGCg -3'
miRNA:   3'- -GGCa--CGGGUuCGGC-CGCCU-CUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 52087 0.75 0.268016
Target:  5'- gCCGUGCgCGc-CCGGCGGccgcgugcAGGUGCGCg -3'
miRNA:   3'- -GGCACGgGUucGGCCGCC--------UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 120421 0.74 0.314291
Target:  5'- aCCGU-CCUGAGCCGGCaGGcggcGGAcUGCGCg -3'
miRNA:   3'- -GGCAcGGGUUCGGCCG-CC----UCU-ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 97089 0.73 0.334424
Target:  5'- gCGUGCCCAAccgcaugcuggugccGCaguggcgcucggcggUGGCGGAGcUGCGCg -3'
miRNA:   3'- gGCACGGGUU---------------CG---------------GCCGCCUCuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 10397 0.73 0.335898
Target:  5'- -gGUGCUCGGGCU-GUGGAGGUGCGg -3'
miRNA:   3'- ggCACGGGUUCGGcCGCCUCUACGCg -5'
25699 3' -59.7 NC_005337.1 + 12921 0.72 0.38229
Target:  5'- cCCGUGCgCCGAG-UGGCuGGuGcgGCGCg -3'
miRNA:   3'- -GGCACG-GGUUCgGCCG-CCuCuaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.