miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 83925 0.7 0.486894
Target:  5'- gCUG-GCCCAGGCuCGGCcGGGcgGCGg -3'
miRNA:   3'- -GGCaCGGGUUCG-GCCGcCUCuaCGCg -5'
25699 3' -59.7 NC_005337.1 + 67896 0.7 0.515141
Target:  5'- gCGUGCUCGaagcgguggAGCCGGaCGGGaGUGcCGCg -3'
miRNA:   3'- gGCACGGGU---------UCGGCC-GCCUcUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 115609 0.69 0.569483
Target:  5'- aCCG-GCCCucggauccgcccGCCGGCGGcg--GCGCg -3'
miRNA:   3'- -GGCaCGGGuu----------CGGCCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 102408 0.69 0.570468
Target:  5'- aCCGUGCCCA--CgGGCGGGGAcauccccgaguacgUgaacGCGCu -3'
miRNA:   3'- -GGCACGGGUucGgCCGCCUCU--------------A----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 78299 0.69 0.573426
Target:  5'- gCCGUaCuCCAGGCUGG-GGAGGUGgccCGCg -3'
miRNA:   3'- -GGCAcG-GGUUCGGCCgCCUCUAC---GCG- -5'
25699 3' -59.7 NC_005337.1 + 4084 0.69 0.577376
Target:  5'- uCCGcGCCCAucuucAGCagcguccucaccgcgCGcGCGGAGAcGCGCg -3'
miRNA:   3'- -GGCaCGGGU-----UCG---------------GC-CGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 38280 0.69 0.582322
Target:  5'- gCGUuCCCGcucgucaAGCacCGGUGGAGggGCGCg -3'
miRNA:   3'- gGCAcGGGU-------UCG--GCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 77381 0.69 0.583312
Target:  5'- gCgGUGCCgCAacaccAGCCGGCgccgcgggaGGuGGAUGUGCg -3'
miRNA:   3'- -GgCACGG-GU-----UCGGCCG---------CC-UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 124796 0.69 0.583312
Target:  5'- gCGcGCagaUggGCCGGCGGuGGAcGCGCc -3'
miRNA:   3'- gGCaCGg--GuuCGGCCGCC-UCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 74508 0.69 0.587277
Target:  5'- gCCG-GCuguccuuuuuguccaCCGAGCUcGCGGAGAcGCGCu -3'
miRNA:   3'- -GGCaCG---------------GGUUCGGcCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 80525 0.69 0.56358
Target:  5'- gCCGagGCCCGGGgC-GCGGAGAUGUcCa -3'
miRNA:   3'- -GGCa-CGGGUUCgGcCGCCUCUACGcG- -5'
25699 3' -59.7 NC_005337.1 + 87221 0.69 0.56358
Target:  5'- aCGUGCgaCUucGCCaGGaugauGGAGAUGCGCu -3'
miRNA:   3'- gGCACG--GGuuCGG-CCg----CCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 68290 0.7 0.515141
Target:  5'- gCG-GCC--GGCCGGCGGcguGGAcGCGCg -3'
miRNA:   3'- gGCaCGGguUCGGCCGCC---UCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 64147 0.7 0.523746
Target:  5'- aCC-UGUCCcugacggAGGgCGGCgaGGAGAUGCGCg -3'
miRNA:   3'- -GGcACGGG-------UUCgGCCG--CCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 50356 0.7 0.524706
Target:  5'- ----cCCCAcGCCGGCGGAGAcGgGCc -3'
miRNA:   3'- ggcacGGGUuCGGCCGCCUCUaCgCG- -5'
25699 3' -59.7 NC_005337.1 + 132310 0.7 0.534337
Target:  5'- gCGUGCac--GgCGGCGGAGGggGCGCu -3'
miRNA:   3'- gGCACGgguuCgGCCGCCUCUa-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 22607 0.69 0.54403
Target:  5'- gCCGUGgaCCCGgacuucuucgAGCCGGCGcGGAUcCGCg -3'
miRNA:   3'- -GGCAC--GGGU----------UCGGCCGCcUCUAcGCG- -5'
25699 3' -59.7 NC_005337.1 + 102377 0.69 0.54403
Target:  5'- cCUG-GCCaccgcGCUGGUGGAGA-GCGCg -3'
miRNA:   3'- -GGCaCGGguu--CGGCCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 56238 0.69 0.553779
Target:  5'- aUCGUGCCCAugucGCCGGCcgacGAGGccGaCGCg -3'
miRNA:   3'- -GGCACGGGUu---CGGCCGc---CUCUa-C-GCG- -5'
25699 3' -59.7 NC_005337.1 + 52929 0.69 0.56358
Target:  5'- aCGUGCCCu-G-CGGCaaGGAGAUGCu- -3'
miRNA:   3'- gGCACGGGuuCgGCCG--CCUCUACGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.