miRNA display CGI


Results 81 - 100 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 60253 0.68 0.603178
Target:  5'- gCCGgaGUCgGAGCCGGaguCGGGGcagGCGCg -3'
miRNA:   3'- -GGCa-CGGgUUCGGCC---GCCUCua-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 123288 0.68 0.603178
Target:  5'- aCCGUGUCCGuGCCGcacgcgcuGCGcGGAUcGCGCc -3'
miRNA:   3'- -GGCACGGGUuCGGC--------CGCcUCUA-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 40009 0.68 0.613145
Target:  5'- aCGgagGCCauccGCgCGGUGGAGAUGCuaGCg -3'
miRNA:   3'- gGCa--CGGguu-CG-GCCGCCUCUACG--CG- -5'
25699 3' -59.7 NC_005337.1 + 835 0.68 0.622128
Target:  5'- gCGgGCCCGGGCUcgacgaaGGCGGcGGgcaGCGCg -3'
miRNA:   3'- gGCaCGGGUUCGG-------CCGCCuCUa--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 34155 0.68 0.623126
Target:  5'- -gGUGCaaCAGGUCcaCGGGGAUGCGCa -3'
miRNA:   3'- ggCACGg-GUUCGGccGCCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 110325 0.68 0.623126
Target:  5'- gCCGUucgGCCC-GGCCgGGCGGcgucGCGCg -3'
miRNA:   3'- -GGCA---CGGGuUCGG-CCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 121987 0.68 0.623126
Target:  5'- aUCGUGCgCGAGCUccuGcGCGcGGGGUGCGa -3'
miRNA:   3'- -GGCACGgGUUCGG---C-CGC-CUCUACGCg -5'
25699 3' -59.7 NC_005337.1 + 74508 0.69 0.587277
Target:  5'- gCCG-GCuguccuuuuuguccaCCGAGCUcGCGGAGAcGCGCu -3'
miRNA:   3'- -GGCaCG---------------GGUUCGGcCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 124796 0.69 0.583312
Target:  5'- gCGcGCagaUggGCCGGCGGuGGAcGCGCc -3'
miRNA:   3'- gGCaCGg--GuuCGGCCGCC-UCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 77381 0.69 0.583312
Target:  5'- gCgGUGCCgCAacaccAGCCGGCgccgcgggaGGuGGAUGUGCg -3'
miRNA:   3'- -GgCACGG-GU-----UCGGCCG---------CC-UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 56238 0.69 0.553779
Target:  5'- aUCGUGCCCAugucGCCGGCcgacGAGGccGaCGCg -3'
miRNA:   3'- -GGCACGGGUu---CGGCCGc---CUCUa-C-GCG- -5'
25699 3' -59.7 NC_005337.1 + 52929 0.69 0.56358
Target:  5'- aCGUGCCCu-G-CGGCaaGGAGAUGCu- -3'
miRNA:   3'- gGCACGGGuuCgGCCG--CCUCUACGcg -5'
25699 3' -59.7 NC_005337.1 + 87221 0.69 0.56358
Target:  5'- aCGUGCgaCUucGCCaGGaugauGGAGAUGCGCu -3'
miRNA:   3'- gGCACG--GGuuCGG-CCg----CCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 80525 0.69 0.56358
Target:  5'- gCCGagGCCCGGGgC-GCGGAGAUGUcCa -3'
miRNA:   3'- -GGCa-CGGGUUCgGcCGCCUCUACGcG- -5'
25699 3' -59.7 NC_005337.1 + 115609 0.69 0.569483
Target:  5'- aCCG-GCCCucggauccgcccGCCGGCGGcg--GCGCg -3'
miRNA:   3'- -GGCaCGGGuu----------CGGCCGCCucuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 102408 0.69 0.570468
Target:  5'- aCCGUGCCCA--CgGGCGGGGAcauccccgaguacgUgaacGCGCu -3'
miRNA:   3'- -GGCACGGGUucGgCCGCCUCU--------------A----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 78299 0.69 0.573426
Target:  5'- gCCGUaCuCCAGGCUGG-GGAGGUGgccCGCg -3'
miRNA:   3'- -GGCAcG-GGUUCGGCCgCCUCUAC---GCG- -5'
25699 3' -59.7 NC_005337.1 + 4084 0.69 0.577376
Target:  5'- uCCGcGCCCAucuucAGCagcguccucaccgcgCGcGCGGAGAcGCGCg -3'
miRNA:   3'- -GGCaCGGGU-----UCG---------------GC-CGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 38280 0.69 0.582322
Target:  5'- gCGUuCCCGcucgucaAGCacCGGUGGAGggGCGCg -3'
miRNA:   3'- gGCAcGGGU-------UCG--GCCGCCUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 29193 0.68 0.623126
Target:  5'- gCGgcGCCCGuGCCGaaGGAGGcgcUGCGCa -3'
miRNA:   3'- gGCa-CGGGUuCGGCcgCCUCU---ACGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.