miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 29021 0.69 0.56358
Target:  5'- aCGgcgGcCCCAAGCCguGGUGGuGGggGCGCc -3'
miRNA:   3'- gGCa--C-GGGUUCGG--CCGCC-UCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 131307 0.69 0.583312
Target:  5'- uUCGUcGCCgAGuGCgaGGCGGAGAccgcgcucaUGCGCg -3'
miRNA:   3'- -GGCA-CGGgUU-CGg-CCGCCUCU---------ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 64658 0.76 0.232868
Target:  5'- uCCaUGUCCAcGUCGGCGaAGAUGCGCa -3'
miRNA:   3'- -GGcACGGGUuCGGCCGCcUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 83910 0.74 0.307326
Target:  5'- cCCGUGCCCGGgcccgucuccGCCGGCgugggguucuuGGAGAaGCGg -3'
miRNA:   3'- -GGCACGGGUU----------CGGCCG-----------CCUCUaCGCg -5'
25699 3' -59.7 NC_005337.1 + 34618 0.73 0.350895
Target:  5'- gCGcGCCC-AGCCGcGCGGcGAUGcCGCg -3'
miRNA:   3'- gGCaCGGGuUCGGC-CGCCuCUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 55168 0.72 0.38229
Target:  5'- uUCGUGCgCGucgacgacguGCCGGUGGGcAUGCGCg -3'
miRNA:   3'- -GGCACGgGUu---------CGGCCGCCUcUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 48793 0.72 0.424076
Target:  5'- aCGUGCUCAAGCUGGUGGccGUGUuCg -3'
miRNA:   3'- gGCACGGGUUCGGCCGCCucUACGcG- -5'
25699 3' -59.7 NC_005337.1 + 77409 0.71 0.459401
Target:  5'- uUCGUcGCCaugcGCUGGCGGuGcAUGCGCa -3'
miRNA:   3'- -GGCA-CGGguu-CGGCCGCCuC-UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 100535 0.7 0.496232
Target:  5'- gCUcUGCgCCAugcGCCGGCGGuucAUGCGCa -3'
miRNA:   3'- -GGcACG-GGUu--CGGCCGCCuc-UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 67551 0.69 0.553779
Target:  5'- gCGUGUCCGGGUugaGGCGGAag-GCGUc -3'
miRNA:   3'- gGCACGGGUUCGg--CCGCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 87934 0.67 0.712333
Target:  5'- uUCGUGCac--GCCGGCGGcagcccGGAccuccUGCGCc -3'
miRNA:   3'- -GGCACGgguuCGGCCGCC------UCU-----ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 14107 0.67 0.702571
Target:  5'- uUGuUGUCCAugguGCCGGCGGuG-UGUGUg -3'
miRNA:   3'- gGC-ACGGGUu---CGGCCGCCuCuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 58999 0.68 0.603178
Target:  5'- -gGUGCUCAAGCgGaGCucgcuGGAGuggGUGCGCg -3'
miRNA:   3'- ggCACGGGUUCGgC-CG-----CCUC---UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 111071 0.68 0.613145
Target:  5'- aCUGcuUGUCC--GCgGGCGuGAGGUGCGCc -3'
miRNA:   3'- -GGC--ACGGGuuCGgCCGC-CUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 5739 0.68 0.640104
Target:  5'- gCCGcGCUCGGGCUcuggcacggcggcgGGCGGcAGccGCGCg -3'
miRNA:   3'- -GGCaCGGGUUCGG--------------CCGCC-UCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 127435 0.68 0.643099
Target:  5'- aCCGUGCCgCGGGCCaa-GGAauccaucAUGCGCa -3'
miRNA:   3'- -GGCACGG-GUUCGGccgCCUc------UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 80032 0.68 0.653078
Target:  5'- cCCG-GCCCGGacgcGCCGGacgaGGAGAUcuaCGCc -3'
miRNA:   3'- -GGCaCGGGUU----CGGCCg---CCUCUAc--GCG- -5'
25699 3' -59.7 NC_005337.1 + 60101 0.67 0.667018
Target:  5'- cCCG-GCCCGAGCgcgccucccgcagcaCGGCGGuGAccuCGCu -3'
miRNA:   3'- -GGCaCGGGUUCG---------------GCCGCCuCUac-GCG- -5'
25699 3' -59.7 NC_005337.1 + 97827 0.67 0.681896
Target:  5'- aCCGUGCguCCGcccgcgcagcugcAGCCGG-GuGAGgcGCGCg -3'
miRNA:   3'- -GGCACG--GGU-------------UCGGCCgC-CUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 28731 0.67 0.692752
Target:  5'- uCC-UGCCCcAGCgGGUGGAc--GCGCu -3'
miRNA:   3'- -GGcACGGGuUCGgCCGCCUcuaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.