miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 45947 0.65 0.921357
Target:  5'- -cGCGCGCCggcgcgcguggcgUCCACG-CUGaCGUCCc -3'
miRNA:   3'- gaCGUGUGGa------------AGGUGCuGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 73629 0.66 0.917952
Target:  5'- -cGUACcCCUUCgACGagacGCUGCUcggGCCCg -3'
miRNA:   3'- gaCGUGuGGAAGgUGC----UGAUGG---CGGG- -5'
25699 5' -55.5 NC_005337.1 + 122403 0.66 0.917952
Target:  5'- gCUGCGCGgCggCgCGCGGCgcCUGUCCg -3'
miRNA:   3'- -GACGUGUgGaaG-GUGCUGauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 70733 0.66 0.917952
Target:  5'- gUGCACGgUgUCCAcCGGgUACCGCUUc -3'
miRNA:   3'- gACGUGUgGaAGGU-GCUgAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 71306 0.66 0.917952
Target:  5'- -cGCACGCaCUUCUcgucgGCGGCgacCCGCgCg -3'
miRNA:   3'- gaCGUGUG-GAAGG-----UGCUGau-GGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 60928 0.66 0.917952
Target:  5'- -gGCACGCga--CGCGccACUGCCGCgCCg -3'
miRNA:   3'- gaCGUGUGgaagGUGC--UGAUGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 53853 0.66 0.917952
Target:  5'- gCUGCGCGCCgcggACGGCUcCUGCUg -3'
miRNA:   3'- -GACGUGUGGaaggUGCUGAuGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 72052 0.66 0.917952
Target:  5'- -gGCACAUCggcaUCCcCGugUcCCGCCg -3'
miRNA:   3'- gaCGUGUGGa---AGGuGCugAuGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 12064 0.66 0.917952
Target:  5'- gUGCGCGCCga-CACGuCcg-CGCCCg -3'
miRNA:   3'- gACGUGUGGaagGUGCuGaugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 52170 0.66 0.917952
Target:  5'- -aGCGCGgCUUCgACGGCgcgcagACgGCCg -3'
miRNA:   3'- gaCGUGUgGAAGgUGCUGa-----UGgCGGg -5'
25699 5' -55.5 NC_005337.1 + 23917 0.66 0.917952
Target:  5'- -cGCGCGCCcgcgcgcCCGCGGCaggcgcgcgcgACgCGCCCg -3'
miRNA:   3'- gaCGUGUGGaa-----GGUGCUGa----------UG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 91370 0.66 0.917376
Target:  5'- -aGCACGCCggagCCGCG-CUcgaagaccucggcGgCGCCCc -3'
miRNA:   3'- gaCGUGUGGaa--GGUGCuGA-------------UgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 23622 0.66 0.917376
Target:  5'- gUGaACcCCUUCCACcGCUucgcgguGCUGCCCg -3'
miRNA:   3'- gACgUGuGGAAGGUGcUGA-------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 65934 0.66 0.917376
Target:  5'- --cCGCGCCgUCCucCGGCacgggcacgcgcgUGCCGCCCu -3'
miRNA:   3'- gacGUGUGGaAGGu-GCUG-------------AUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 108919 0.66 0.916797
Target:  5'- -aGgGCACCagcgagacgcgCCGCGACgUGgCGCCCu -3'
miRNA:   3'- gaCgUGUGGaa---------GGUGCUG-AUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 91792 0.66 0.91446
Target:  5'- -cGCGCGC--UCCACGGCggcggcgguggcgggUACCGCUUc -3'
miRNA:   3'- gaCGUGUGgaAGGUGCUG---------------AUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 49162 0.66 0.912084
Target:  5'- cCUGgACACCUUCUuu-ACUgaauuuccGCCGUCCg -3'
miRNA:   3'- -GACgUGUGGAAGGugcUGA--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 104845 0.66 0.912084
Target:  5'- uCUGCGagaACUg-CgGCGACaucGCCGCCCg -3'
miRNA:   3'- -GACGUg--UGGaaGgUGCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 90880 0.66 0.912084
Target:  5'- -gGC-CACCgUCUugGuGCccACCGCCCg -3'
miRNA:   3'- gaCGuGUGGaAGGugC-UGa-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 90315 0.66 0.912084
Target:  5'- -gGCGCGCCgccguagauggUgCGCGGgaACCGCCa -3'
miRNA:   3'- gaCGUGUGGa----------AgGUGCUgaUGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.