miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 45947 0.65 0.921357
Target:  5'- -cGCGCGCCggcgcgcguggcgUCCACG-CUGaCGUCCc -3'
miRNA:   3'- gaCGUGUGGa------------AGGUGCuGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 50031 0.66 0.893048
Target:  5'- -cGCACACgUcgUCCAgGAagaUGCCGCgCu -3'
miRNA:   3'- gaCGUGUGgA--AGGUgCUg--AUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 103092 0.66 0.893048
Target:  5'- -aGCuCACCaagaaggUCUGCGACUAcauCCGCUCg -3'
miRNA:   3'- gaCGuGUGGa------AGGUGCUGAU---GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 57380 0.66 0.912084
Target:  5'- gUGU--GCC-UCgGCGAgCUGCUGCCCg -3'
miRNA:   3'- gACGugUGGaAGgUGCU-GAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 110888 0.66 0.912084
Target:  5'- -gGCACAgCagcaCCAgCGACacguugaggUGCCGCCCg -3'
miRNA:   3'- gaCGUGUgGaa--GGU-GCUG---------AUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 14347 0.66 0.893048
Target:  5'- aCUGUcuauGCAC--UCCACGACga-UGCCCg -3'
miRNA:   3'- -GACG----UGUGgaAGGUGCUGaugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 78145 0.66 0.899629
Target:  5'- gCUGCACGCCgcgCaCGCuGGCgaUGCCGUgCg -3'
miRNA:   3'- -GACGUGUGGaa-G-GUG-CUG--AUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 110081 0.66 0.898331
Target:  5'- -cGCGCGCCUcgCCGguaacggcgcgaGGCUGCgCGUCCa -3'
miRNA:   3'- gaCGUGUGGAa-GGUg-----------CUGAUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 3028 0.66 0.899629
Target:  5'- gUGCGCGCCgaugUgCGCGACcACguaCGCCa -3'
miRNA:   3'- gACGUGUGGa---AgGUGCUGaUG---GCGGg -5'
25699 5' -55.5 NC_005337.1 + 73754 0.66 0.905975
Target:  5'- aUGUcCACgUUCCGgcagacCGugUACCuGCCCg -3'
miRNA:   3'- gACGuGUGgAAGGU------GCugAUGG-CGGG- -5'
25699 5' -55.5 NC_005337.1 + 39562 0.66 0.912084
Target:  5'- -cGcCACGCacgUCUACGAC-ACCGgCCg -3'
miRNA:   3'- gaC-GUGUGga-AGGUGCUGaUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 75345 0.66 0.893048
Target:  5'- -aGCAgGuCCUcgUCCACGGucGCCGCgCCg -3'
miRNA:   3'- gaCGUgU-GGA--AGGUGCUgaUGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 98146 0.66 0.912084
Target:  5'- -cGCACGCCgcgCACGACagGgUGCCUg -3'
miRNA:   3'- gaCGUGUGGaagGUGCUGa-UgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 37968 0.66 0.912084
Target:  5'- -aGguCACCUUCC-CGGC-GCUGgCCg -3'
miRNA:   3'- gaCguGUGGAAGGuGCUGaUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 77003 0.66 0.899629
Target:  5'- -cGCGCGCCggccCCGCG-CgGCCccguGCCCg -3'
miRNA:   3'- gaCGUGUGGaa--GGUGCuGaUGG----CGGG- -5'
25699 5' -55.5 NC_005337.1 + 98402 0.66 0.899629
Target:  5'- -cGCACACgUcccgcaguUCCGCGcgu-CCGCCCc -3'
miRNA:   3'- gaCGUGUGgA--------AGGUGCugauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 13011 0.66 0.893048
Target:  5'- gUGCAgGCCUgCgACGACUACUuCaCCg -3'
miRNA:   3'- gACGUgUGGAaGgUGCUGAUGGcG-GG- -5'
25699 5' -55.5 NC_005337.1 + 49162 0.66 0.912084
Target:  5'- cCUGgACACCUUCUuu-ACUgaauuuccGCCGUCCg -3'
miRNA:   3'- -GACgUGUGGAAGGugcUGA--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 17354 0.66 0.912084
Target:  5'- -cGCGCAgCagCaC-CGuCUGCCGCCCg -3'
miRNA:   3'- gaCGUGUgGaaG-GuGCuGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 9460 0.66 0.893048
Target:  5'- gUGCggaGCACC-UCCuCG-CUGCgGCCCc -3'
miRNA:   3'- gACG---UGUGGaAGGuGCuGAUGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.