miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 49162 0.66 0.912084
Target:  5'- cCUGgACACCUUCUuu-ACUgaauuuccGCCGUCCg -3'
miRNA:   3'- -GACgUGUGGAAGGugcUGA--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 29583 0.66 0.893048
Target:  5'- -cGUugGCCUgccggaugagCUugGuCUugCGCCCg -3'
miRNA:   3'- gaCGugUGGAa---------GGugCuGAugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 90880 0.66 0.912084
Target:  5'- -gGC-CACCgUCUugGuGCccACCGCCCg -3'
miRNA:   3'- gaCGuGUGGaAGGugC-UGa-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 71306 0.66 0.917952
Target:  5'- -cGCACGCaCUUCUcgucgGCGGCgacCCGCgCg -3'
miRNA:   3'- gaCGUGUG-GAAGG-----UGCUGau-GGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 52170 0.66 0.917952
Target:  5'- -aGCGCGgCUUCgACGGCgcgcagACgGCCg -3'
miRNA:   3'- gaCGUGUgGAAGgUGCUGa-----UGgCGGg -5'
25699 5' -55.5 NC_005337.1 + 110888 0.66 0.912084
Target:  5'- -gGCACAgCagcaCCAgCGACacguugaggUGCCGCCCg -3'
miRNA:   3'- gaCGUGUgGaa--GGU-GCUG---------AUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 90315 0.66 0.912084
Target:  5'- -gGCGCGCCgccguagauggUgCGCGGgaACCGCCa -3'
miRNA:   3'- gaCGUGUGGa----------AgGUGCUgaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 73754 0.66 0.905975
Target:  5'- aUGUcCACgUUCCGgcagacCGugUACCuGCCCg -3'
miRNA:   3'- gACGuGUGgAAGGU------GCugAUGG-CGGG- -5'
25699 5' -55.5 NC_005337.1 + 98402 0.66 0.899629
Target:  5'- -cGCACACgUcccgcaguUCCGCGcgu-CCGCCCc -3'
miRNA:   3'- gaCGUGUGgA--------AGGUGCugauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 98146 0.66 0.912084
Target:  5'- -cGCACGCCgcgCACGACagGgUGCCUg -3'
miRNA:   3'- gaCGUGUGGaagGUGCUGa-UgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 42747 0.66 0.895708
Target:  5'- gCUGCugACCgacgCCucucgcgcccgcuuCGAC-GCCGCCUa -3'
miRNA:   3'- -GACGugUGGaa--GGu-------------GCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 74396 0.66 0.893048
Target:  5'- -cGUACAUC-UCCGgGGCUcuggccACCGCCa -3'
miRNA:   3'- gaCGUGUGGaAGGUgCUGA------UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 39562 0.66 0.912084
Target:  5'- -cGcCACGCacgUCUACGAC-ACCGgCCg -3'
miRNA:   3'- gaC-GUGUGga-AGGUGCUGaUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 122754 0.66 0.893048
Target:  5'- -cGCACGCCgaCCGCgugGAgUACUGgCCg -3'
miRNA:   3'- gaCGUGUGGaaGGUG---CUgAUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 122403 0.66 0.917952
Target:  5'- gCUGCGCGgCggCgCGCGGCgcCUGUCCg -3'
miRNA:   3'- -GACGUGUgGaaG-GUGCUGauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 57380 0.66 0.912084
Target:  5'- gUGU--GCC-UCgGCGAgCUGCUGCCCg -3'
miRNA:   3'- gACGugUGGaAGgUGCU-GAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 70733 0.66 0.917952
Target:  5'- gUGCACGgUgUCCAcCGGgUACCGCUUc -3'
miRNA:   3'- gACGUGUgGaAGGU-GCUgAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 23622 0.66 0.917376
Target:  5'- gUGaACcCCUUCCACcGCUucgcgguGCUGCCCg -3'
miRNA:   3'- gACgUGuGGAAGGUGcUGA-------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 103231 0.66 0.893048
Target:  5'- gCUGCA-ACCUgCCGCuGgUGCgCGCCCg -3'
miRNA:   3'- -GACGUgUGGAaGGUGcUgAUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 50303 0.66 0.893048
Target:  5'- gUGCcCGCCcgcgCCGCcGCUgcccugcgcggACCGCCCg -3'
miRNA:   3'- gACGuGUGGaa--GGUGcUGA-----------UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.