Results 61 - 80 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25699 | 5' | -55.5 | NC_005337.1 | + | 127990 | 0.66 | 0.893048 |
Target: 5'- gCUGCaACGCCga-CACGAC-GCUGCUg -3' miRNA: 3'- -GACG-UGUGGaagGUGCUGaUGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 9460 | 0.66 | 0.893048 |
Target: 5'- gUGCggaGCACC-UCCuCG-CUGCgGCCCc -3' miRNA: 3'- gACG---UGUGGaAGGuGCuGAUGgCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 50031 | 0.66 | 0.893048 |
Target: 5'- -cGCACACgUcgUCCAgGAagaUGCCGCgCu -3' miRNA: 3'- gaCGUGUGgA--AGGUgCUg--AUGGCGgG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 103092 | 0.66 | 0.893048 |
Target: 5'- -aGCuCACCaagaaggUCUGCGACUAcauCCGCUCg -3' miRNA: 3'- gaCGuGUGGa------AGGUGCUGAU---GGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 110081 | 0.66 | 0.898331 |
Target: 5'- -cGCGCGCCUcgCCGguaacggcgcgaGGCUGCgCGUCCa -3' miRNA: 3'- gaCGUGUGGAa-GGUg-----------CUGAUG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 95141 | 0.66 | 0.899629 |
Target: 5'- uCUGCAuCACCaggcugUCCACGucgaUGCgacaGCCCa -3' miRNA: 3'- -GACGU-GUGGa-----AGGUGCug--AUGg---CGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 3028 | 0.66 | 0.899629 |
Target: 5'- gUGCGCGCCgaugUgCGCGACcACguaCGCCa -3' miRNA: 3'- gACGUGUGGa---AgGUGCUGaUG---GCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 77003 | 0.66 | 0.899629 |
Target: 5'- -cGCGCGCCggccCCGCG-CgGCCccguGCCCg -3' miRNA: 3'- gaCGUGUGGaa--GGUGCuGaUGG----CGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 78145 | 0.66 | 0.899629 |
Target: 5'- gCUGCACGCCgcgCaCGCuGGCgaUGCCGUgCg -3' miRNA: 3'- -GACGUGUGGaa-G-GUG-CUG--AUGGCGgG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 75345 | 0.66 | 0.893048 |
Target: 5'- -aGCAgGuCCUcgUCCACGGucGCCGCgCCg -3' miRNA: 3'- gaCGUgU-GGA--AGGUGCUgaUGGCG-GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 14347 | 0.66 | 0.893048 |
Target: 5'- aCUGUcuauGCAC--UCCACGACga-UGCCCg -3' miRNA: 3'- -GACG----UGUGgaAGGUGCUGaugGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 13011 | 0.66 | 0.893048 |
Target: 5'- gUGCAgGCCUgCgACGACUACUuCaCCg -3' miRNA: 3'- gACGUgUGGAaGgUGCUGAUGGcG-GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 94238 | 0.66 | 0.899629 |
Target: 5'- -gGCGCACCg-CgACGACgcCCGCUa -3' miRNA: 3'- gaCGUGUGGaaGgUGCUGauGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 12064 | 0.66 | 0.917952 |
Target: 5'- gUGCGCGCCga-CACGuCcg-CGCCCg -3' miRNA: 3'- gACGUGUGGaagGUGCuGaugGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 24159 | 0.67 | 0.886235 |
Target: 5'- -aGcCAUGgCUUCCuACGACaaUACCGCCUu -3' miRNA: 3'- gaC-GUGUgGAAGG-UGCUG--AUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 29032 | 0.67 | 0.886235 |
Target: 5'- -gGCGgGCCUcgUCCAUGAgccgGgCGCCCg -3' miRNA: 3'- gaCGUgUGGA--AGGUGCUga--UgGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 46323 | 0.67 | 0.886235 |
Target: 5'- gUGCagGCGCaggaggUCCG-GGCUGCCGCCg -3' miRNA: 3'- gACG--UGUGga----AGGUgCUGAUGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 53242 | 0.67 | 0.886235 |
Target: 5'- cCUGCGCAUCcccgccaucUCCACgcccgGACUucGCgCGCCCg -3' miRNA: 3'- -GACGUGUGGa--------AGGUG-----CUGA--UG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 133154 | 0.67 | 0.864448 |
Target: 5'- -cGCGCGCgUgCUGCGGCUGCU-CCCg -3' miRNA: 3'- gaCGUGUGgAaGGUGCUGAUGGcGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 39692 | 0.67 | 0.864448 |
Target: 5'- gUGCGCuuCUUCgacaCGCGGCUgGCCGCgCCc -3' miRNA: 3'- gACGUGugGAAG----GUGCUGA-UGGCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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