miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 39692 0.67 0.864448
Target:  5'- gUGCGCuuCUUCgacaCGCGGCUgGCCGCgCCc -3'
miRNA:   3'- gACGUGugGAAG----GUGCUGA-UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 103313 0.67 0.879194
Target:  5'- gUGCGCAUCaacuucggcgCCggGCGGCUcacCCGCCCg -3'
miRNA:   3'- gACGUGUGGaa--------GG--UGCUGAu--GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 66967 0.67 0.879194
Target:  5'- -aGCGCGCCauggaCCGCuACaACCGCCUc -3'
miRNA:   3'- gaCGUGUGGaa---GGUGcUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 15481 0.67 0.87193
Target:  5'- -gGCGCGCgCgg-CACGACggcGCCGCCg -3'
miRNA:   3'- gaCGUGUG-GaagGUGCUGa--UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 120446 0.67 0.877038
Target:  5'- aCUGCGCGCCccacaUgguccugaucugcgUCCGgGGC-AUCGCCCa -3'
miRNA:   3'- -GACGUGUGG-----A--------------AGGUgCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 12065 0.67 0.87193
Target:  5'- gUGCACAgCUugUCCuuGACguccaCGCCCu -3'
miRNA:   3'- gACGUGUgGA--AGGugCUGaug--GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 27282 0.67 0.886235
Target:  5'- uCUGCGCccGCCUugUCCACGAC-GCagaaGCUUa -3'
miRNA:   3'- -GACGUG--UGGA--AGGUGCUGaUGg---CGGG- -5'
25699 5' -55.5 NC_005337.1 + 59566 0.67 0.886235
Target:  5'- aUGCGCAUCUggUCGCGGCggaUGCCGgUCu -3'
miRNA:   3'- gACGUGUGGAa-GGUGCUG---AUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 35274 0.67 0.886235
Target:  5'- -cGCGCACCUcggggggcggcUCCAccuCGGCc-CCGCUCg -3'
miRNA:   3'- gaCGUGUGGA-----------AGGU---GCUGauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 127057 0.67 0.882037
Target:  5'- gUGCGCACCgaaggcggguucgucUUCUACGACaACgUGCUCu -3'
miRNA:   3'- gACGUGUGG---------------AAGGUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 40711 0.67 0.87193
Target:  5'- aUGCACGCCU---GCGACgccgagACCGUgCa -3'
miRNA:   3'- gACGUGUGGAaggUGCUGa-----UGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 66109 0.67 0.879194
Target:  5'- -gGCGUACUcggCCACGAagauccGCCGCCCg -3'
miRNA:   3'- gaCGUGUGGaa-GGUGCUga----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 104742 0.67 0.879194
Target:  5'- gUGCACGgCcgCCGCG-CgaagACCGCCg -3'
miRNA:   3'- gACGUGUgGaaGGUGCuGa---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 95550 0.67 0.87193
Target:  5'- uUGCcgACGCCggugUCCcccgucaggACGACggGCCGCCg -3'
miRNA:   3'- gACG--UGUGGa---AGG---------UGCUGa-UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 8303 0.67 0.87193
Target:  5'- uCUGCagccGCGCgUUCCGCG-CguucaCGCCCa -3'
miRNA:   3'- -GACG----UGUGgAAGGUGCuGaug--GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 124064 0.67 0.879194
Target:  5'- gUGUACGgcuucuacagcuCCUUCUuCGACaGCCGCCa -3'
miRNA:   3'- gACGUGU------------GGAAGGuGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 111067 0.67 0.864448
Target:  5'- aUGUACugCUugUCCGCGggcgugagguGCgccagGCCGUCCa -3'
miRNA:   3'- gACGUGugGA--AGGUGC----------UGa----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 6003 0.67 0.87193
Target:  5'- uUGCAgACCg-CCGCGugcaGCggcguCCGCCCa -3'
miRNA:   3'- gACGUgUGGaaGGUGC----UGau---GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 87087 0.67 0.87193
Target:  5'- uUGUcCACCUUCCcggGCGugUGCaGCaCCa -3'
miRNA:   3'- gACGuGUGGAAGG---UGCugAUGgCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 96907 0.67 0.87193
Target:  5'- cCUGguCuCCUUCUACGACU-CCggcggaaacaGCCCc -3'
miRNA:   3'- -GACguGuGGAAGGUGCUGAuGG----------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.