miRNA display CGI


Results 21 - 40 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 28036 0.74 0.507749
Target:  5'- cCUGC-CGCCggCaCGCGACcGCCGCCa -3'
miRNA:   3'- -GACGuGUGGaaG-GUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 6345 0.74 0.498016
Target:  5'- -cGCGCACCgcgUCCGCGuACU--UGCCCa -3'
miRNA:   3'- gaCGUGUGGa--AGGUGC-UGAugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 24711 0.73 0.527451
Target:  5'- -cGUGCACCccgcggagUUCCGCGGgUACgCGCCCu -3'
miRNA:   3'- gaCGUGUGG--------AAGGUGCUgAUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133083 0.73 0.537409
Target:  5'- aUGCGCGCCcgugCCGCG-CUcgcgcACCGCCUa -3'
miRNA:   3'- gACGUGUGGaa--GGUGCuGA-----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 72884 0.73 0.537409
Target:  5'- gUGCACGCC-UCCGCGACggagcucuuCCaGUCCg -3'
miRNA:   3'- gACGUGUGGaAGGUGCUGau-------GG-CGGG- -5'
25699 5' -55.5 NC_005337.1 + 14759 0.73 0.54743
Target:  5'- -aGCugGCCUUgCACGAgUGCUGCUUc -3'
miRNA:   3'- gaCGugUGGAAgGUGCUgAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 71218 0.73 0.527451
Target:  5'- -cGCG-ACCUUCaucaucgaCACGaACUACCGCCCg -3'
miRNA:   3'- gaCGUgUGGAAG--------GUGC-UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 64870 0.73 0.537409
Target:  5'- -gGCACAUg-UCCGCGAUcgcgUGCCGCCUc -3'
miRNA:   3'- gaCGUGUGgaAGGUGCUG----AUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 1646 0.73 0.54743
Target:  5'- -cGCGCGCCcgCgGCGACgagcuugGCCGCCg -3'
miRNA:   3'- gaCGUGUGGaaGgUGCUGa------UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 105141 0.73 0.567643
Target:  5'- -aGCAUACgaUCCGCGGCaucGCCGCaCCu -3'
miRNA:   3'- gaCGUGUGgaAGGUGCUGa--UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 133012 0.73 0.557511
Target:  5'- -cGCGgGCCaUCCuGCGGCUgAUCGCCCg -3'
miRNA:   3'- gaCGUgUGGaAGG-UGCUGA-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 29133 0.72 0.577822
Target:  5'- -aGCAgCACCaugUCgGCGACgGCCGUCCg -3'
miRNA:   3'- gaCGU-GUGGa--AGgUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 23064 0.72 0.618858
Target:  5'- -cGCGCGCCggaaCGCGGCgGCCguGCCCg -3'
miRNA:   3'- gaCGUGUGGaag-GUGCUGaUGG--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 47550 0.72 0.59829
Target:  5'- -cGUGgGCCUgaugCCGCGACUgaccACCGCCg -3'
miRNA:   3'- gaCGUgUGGAa---GGUGCUGA----UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 86302 0.72 0.59829
Target:  5'- -aGCGCGCCccgUCCACGAagaaGCCGUCg -3'
miRNA:   3'- gaCGUGUGGa--AGGUGCUga--UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 65210 0.72 0.608565
Target:  5'- gUGCACccGCCgcuggCCACGcugGCcACCGCCCu -3'
miRNA:   3'- gACGUG--UGGaa---GGUGC---UGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 121393 0.72 0.608565
Target:  5'- gUGCACGCCgcUCCACGuCUACUugcgGCUCc -3'
miRNA:   3'- gACGUGUGGa-AGGUGCuGAUGG----CGGG- -5'
25699 5' -55.5 NC_005337.1 + 61895 0.72 0.629162
Target:  5'- -gGCuCGCUgaCCGCGACgGCCGUCCg -3'
miRNA:   3'- gaCGuGUGGaaGGUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 89124 0.72 0.629162
Target:  5'- uCUGCcgacugGCGCCgggCGCGACUaGCUGCCCg -3'
miRNA:   3'- -GACG------UGUGGaagGUGCUGA-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 41745 0.72 0.618858
Target:  5'- -cGCGCACCgcgUCCAUggGGCgGCCGCgCa -3'
miRNA:   3'- gaCGUGUGGa--AGGUG--CUGaUGGCGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.