miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 30407 0.72 0.59829
Target:  5'- -gGC-CGCCgcgcUCCGCGaACUGCCGCUUg -3'
miRNA:   3'- gaCGuGUGGa---AGGUGC-UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 18779 0.72 0.608565
Target:  5'- -gGCGCACCUgacgUCCACGGCc-CCGUgCg -3'
miRNA:   3'- gaCGUGUGGA----AGGUGCUGauGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 23064 0.72 0.618858
Target:  5'- -cGCGCGCCggaaCGCGGCgGCCguGCCCg -3'
miRNA:   3'- gaCGUGUGGaag-GUGCUGaUGG--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 36755 0.72 0.608565
Target:  5'- uCUGCGgGCCcUCCA-GGCUGCgCGCCa -3'
miRNA:   3'- -GACGUgUGGaAGGUgCUGAUG-GCGGg -5'
25699 5' -55.5 NC_005337.1 + 61895 0.72 0.629162
Target:  5'- -gGCuCGCUgaCCGCGACgGCCGUCCg -3'
miRNA:   3'- gaCGuGUGGaaGGUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 41745 0.72 0.618858
Target:  5'- -cGCGCACCgcgUCCAUggGGCgGCCGCgCa -3'
miRNA:   3'- gaCGUGUGGa--AGGUG--CUGaUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 52236 0.71 0.660053
Target:  5'- -cGCucgACGCCauUUCCGCGACgcugUCGCCCa -3'
miRNA:   3'- gaCG---UGUGG--AAGGUGCUGau--GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 103638 0.71 0.649768
Target:  5'- -cGCGCGCCaUCCuCGGCUGCgCGCaggCCa -3'
miRNA:   3'- gaCGUGUGGaAGGuGCUGAUG-GCG---GG- -5'
25699 5' -55.5 NC_005337.1 + 58254 0.71 0.649768
Target:  5'- -gGCGCGgcggUCUUCCGCGugUACCGgCg -3'
miRNA:   3'- gaCGUGU----GGAAGGUGCugAUGGCgGg -5'
25699 5' -55.5 NC_005337.1 + 128079 0.71 0.649768
Target:  5'- gUGCACGCCUUCaaagugUACGGCaACgCGCUCu -3'
miRNA:   3'- gACGUGUGGAAG------GUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 6682 0.71 0.660053
Target:  5'- -aGCACgACUcggcgacgUCCACGGCUG-CGCCCg -3'
miRNA:   3'- gaCGUG-UGGa-------AGGUGCUGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 99355 0.71 0.660053
Target:  5'- -cGC-CACCUUCaaaaACGGCUgcaucuacgucaACCGCCUg -3'
miRNA:   3'- gaCGuGUGGAAGg---UGCUGA------------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 9961 0.71 0.649768
Target:  5'- aUGaGCGCCUgcgCCGCGACgagGCCGCguCCu -3'
miRNA:   3'- gACgUGUGGAa--GGUGCUGa--UGGCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 29558 0.71 0.680548
Target:  5'- aUGC-CGCCg-CCGCGGCgGCgGCCCu -3'
miRNA:   3'- gACGuGUGGaaGGUGCUGaUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 120149 0.71 0.680548
Target:  5'- -cGCGgACUUcgUCCGCGugGCcACCGCCCg -3'
miRNA:   3'- gaCGUgUGGA--AGGUGC--UGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 51751 0.71 0.680548
Target:  5'- gCUGCcCGCCcuggCgCugGACgGCCGCCCc -3'
miRNA:   3'- -GACGuGUGGaa--G-GugCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 76391 0.7 0.690739
Target:  5'- uUGUACACCgugCgCGCGgggcGCUGgCGCCCg -3'
miRNA:   3'- gACGUGUGGaa-G-GUGC----UGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 88132 0.7 0.700881
Target:  5'- -aGCACGCgCUcgaucUCCugG--UGCCGCCCg -3'
miRNA:   3'- gaCGUGUG-GA-----AGGugCugAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 100299 0.7 0.721976
Target:  5'- gUGCGCACCUUCCugGcccuggccgagaGCUucgggauccuggacuCCGUCCc -3'
miRNA:   3'- gACGUGUGGAAGGugC------------UGAu--------------GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 79166 0.7 0.740768
Target:  5'- -aGgGCACC-UCCACGAUcucgGCCGUCUc -3'
miRNA:   3'- gaCgUGUGGaAGGUGCUGa---UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.