miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 3314 0.7 0.700881
Target:  5'- uUGCGCACg-UCCACGGCca-CGCCg -3'
miRNA:   3'- gACGUGUGgaAGGUGCUGaugGCGGg -5'
25699 5' -55.5 NC_005337.1 + 76391 0.7 0.690739
Target:  5'- uUGUACACCgugCgCGCGgggcGCUGgCGCCCg -3'
miRNA:   3'- gACGUGUGGaa-G-GUGC----UGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 88132 0.7 0.700881
Target:  5'- -aGCACGCgCUcgaucUCCugG--UGCCGCCCg -3'
miRNA:   3'- gaCGUGUG-GA-----AGGugCugAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 93679 0.7 0.710964
Target:  5'- -aGUACAUgUUCCugGACUucuUCGCCa -3'
miRNA:   3'- gaCGUGUGgAAGGugCUGAu--GGCGGg -5'
25699 5' -55.5 NC_005337.1 + 82177 0.7 0.710964
Target:  5'- -cGCGCACCUg-CACG-CgGCCGCCg -3'
miRNA:   3'- gaCGUGUGGAagGUGCuGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 95163 0.7 0.690739
Target:  5'- -cGCACGCUgcCCGCGAgCUuCCGCgCCa -3'
miRNA:   3'- gaCGUGUGGaaGGUGCU-GAuGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 23621 0.7 0.690739
Target:  5'- -aGCGCAUCUgCUACGACU-UCGCCg -3'
miRNA:   3'- gaCGUGUGGAaGGUGCUGAuGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 57139 0.7 0.720979
Target:  5'- -cGCGCugC-UCgGCGGCgGCaCGCCCg -3'
miRNA:   3'- gaCGUGugGaAGgUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 100299 0.7 0.721976
Target:  5'- gUGCGCACCUUCCugGcccuggccgagaGCUucgggauccuggacuCCGUCCc -3'
miRNA:   3'- gACGUGUGGAAGGugC------------UGAu--------------GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 52814 0.7 0.730917
Target:  5'- -gGCGgACCUgcUgCGCGACUACgCGCuCCa -3'
miRNA:   3'- gaCGUgUGGA--AgGUGCUGAUG-GCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 92683 0.7 0.730917
Target:  5'- gUGCuCACCUUCCugGGCgGCgGCgaCCu -3'
miRNA:   3'- gACGuGUGGAAGGugCUGaUGgCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 34830 0.7 0.730917
Target:  5'- -cGCGCguccacgaggugGCCcacgCCGCGGCUcagcacgcacccGCCGCCCg -3'
miRNA:   3'- gaCGUG------------UGGaa--GGUGCUGA------------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 50240 0.7 0.740768
Target:  5'- gUGCGCGCC-UCCGCcgGugUGucCCGCCg -3'
miRNA:   3'- gACGUGUGGaAGGUG--CugAU--GGCGGg -5'
25699 5' -55.5 NC_005337.1 + 123843 0.7 0.721976
Target:  5'- -cGCGCACCgccgcgcaggcguccUCCugGGCgcaGCCGCaCCu -3'
miRNA:   3'- gaCGUGUGGa--------------AGGugCUGa--UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 18632 0.7 0.710964
Target:  5'- -cGCACACUccUCgGCGAUggcgGCCGCgCCg -3'
miRNA:   3'- gaCGUGUGGa-AGgUGCUGa---UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 79166 0.7 0.740768
Target:  5'- -aGgGCACC-UCCACGAUcucgGCCGUCUc -3'
miRNA:   3'- gaCgUGUGGaAGGUGCUGa---UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 65122 0.7 0.730917
Target:  5'- gCUGCuggucGCACUggCCGCGAaggcgGCCGCCg -3'
miRNA:   3'- -GACG-----UGUGGaaGGUGCUga---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 34028 0.69 0.797527
Target:  5'- -cGCucgGCGCCcUCCACGAgcUUGCCGUCg -3'
miRNA:   3'- gaCG---UGUGGaAGGUGCU--GAUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 133403 0.69 0.797527
Target:  5'- -gGCGCGCuCUUCCGCccGGCcgcgcccgcGCUGCCCg -3'
miRNA:   3'- gaCGUGUG-GAAGGUG--CUGa--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 803 0.69 0.797527
Target:  5'- -gGCAgACCagcUCCGCGGa-GCCGUCCg -3'
miRNA:   3'- gaCGUgUGGa--AGGUGCUgaUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.