miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 67342 0.69 0.750523
Target:  5'- --aCACGCCcUCCACGAUgGCgcaGCCCa -3'
miRNA:   3'- gacGUGUGGaAGGUGCUGaUGg--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 94836 0.69 0.750523
Target:  5'- gUGCGCACCgagCGCGGCccgagcgGgCGCCCg -3'
miRNA:   3'- gACGUGUGGaagGUGCUGa------UgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 58414 0.69 0.750523
Target:  5'- aUGUACGCCa-UCGCGGCggcGCCGCUCc -3'
miRNA:   3'- gACGUGUGGaaGGUGCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 20146 0.69 0.769707
Target:  5'- -gGCGCGC--UCCACG-CUGCCGCaggCCg -3'
miRNA:   3'- gaCGUGUGgaAGGUGCuGAUGGCG---GG- -5'
25699 5' -55.5 NC_005337.1 + 14707 0.69 0.779117
Target:  5'- gUGCGggUACCUgcucUCCACGACgcccAUCGCCa -3'
miRNA:   3'- gACGU--GUGGA----AGGUGCUGa---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 122331 0.69 0.779117
Target:  5'- aUGCGCGuCCcUCgACGGC-GCgCGCCCg -3'
miRNA:   3'- gACGUGU-GGaAGgUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 62346 0.69 0.788393
Target:  5'- -cGCGCACCUcggggUCCACG-CUGUCGUCg -3'
miRNA:   3'- gaCGUGUGGA-----AGGUGCuGAUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 96581 0.69 0.788393
Target:  5'- -aGCuCGgCgUCCugGACgccGCCGCCCu -3'
miRNA:   3'- gaCGuGUgGaAGGugCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 76118 0.69 0.788393
Target:  5'- -cGCACGCgCUUgCGCG-CgaagGCCGCCg -3'
miRNA:   3'- gaCGUGUG-GAAgGUGCuGa---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 126046 0.69 0.788393
Target:  5'- aUGCGCGCCggugcggaCGCGACccuUGCCGaCCUg -3'
miRNA:   3'- gACGUGUGGaag-----GUGCUG---AUGGC-GGG- -5'
25699 5' -55.5 NC_005337.1 + 803 0.69 0.797527
Target:  5'- -gGCAgACCagcUCCGCGGa-GCCGUCCg -3'
miRNA:   3'- gaCGUgUGGa--AGGUGCUgaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 34028 0.69 0.797527
Target:  5'- -cGCucgGCGCCcUCCACGAgcUUGCCGUCg -3'
miRNA:   3'- gaCG---UGUGGaAGGUGCU--GAUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 133403 0.69 0.797527
Target:  5'- -gGCGCGCuCUUCCGCccGGCcgcgcccgcGCUGCCCg -3'
miRNA:   3'- gaCGUGUG-GAAGGUG--CUGa--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 1982 0.69 0.750523
Target:  5'- gUGCACGCCgggUCgGCGucaGCUGCgGCUUg -3'
miRNA:   3'- gACGUGUGGa--AGgUGC---UGAUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 54151 0.69 0.769707
Target:  5'- gUGuCGCGCCcggugUCCACGACcGCCugGCUCg -3'
miRNA:   3'- gAC-GUGUGGa----AGGUGCUGaUGG--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 72935 0.69 0.750523
Target:  5'- -cGCACACCaUCgACGGC--CgGCCCa -3'
miRNA:   3'- gaCGUGUGGaAGgUGCUGauGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 48244 0.69 0.747607
Target:  5'- gCUGCACcgccgccauggaccGCC-UCCGCuGCUGCuaCGCCCg -3'
miRNA:   3'- -GACGUG--------------UGGaAGGUGcUGAUG--GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 79523 0.69 0.750523
Target:  5'- -aGCACGCCUucuUCUugGACaucaUGCgGUCCu -3'
miRNA:   3'- gaCGUGUGGA---AGGugCUG----AUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 53067 0.69 0.750523
Target:  5'- -cGgACACCgaCUACGACUuCUGCCUg -3'
miRNA:   3'- gaCgUGUGGaaGGUGCUGAuGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 123810 0.69 0.769707
Target:  5'- uCUGCGcCGCCcacgugUUCCugGGCggcuCCGUCCc -3'
miRNA:   3'- -GACGU-GUGG------AAGGugCUGau--GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.