Results 101 - 120 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25699 | 5' | -55.5 | NC_005337.1 | + | 122331 | 0.69 | 0.779117 |
Target: 5'- aUGCGCGuCCcUCgACGGC-GCgCGCCCg -3' miRNA: 3'- gACGUGU-GGaAGgUGCUGaUG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 14707 | 0.69 | 0.779117 |
Target: 5'- gUGCGggUACCUgcucUCCACGACgcccAUCGCCa -3' miRNA: 3'- gACGU--GUGGA----AGGUGCUGa---UGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 57091 | 0.69 | 0.769707 |
Target: 5'- gCUGUuCGCCaUCCGCGGgUGgCGCCg -3' miRNA: 3'- -GACGuGUGGaAGGUGCUgAUgGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 131340 | 0.69 | 0.773486 |
Target: 5'- aUGCGCGCCgugcgcgucggcacUCCgGCGAC-GCCGCUCc -3' miRNA: 3'- gACGUGUGGa-------------AGG-UGCUGaUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 89112 | 0.69 | 0.779117 |
Target: 5'- -gGUACGCCUUgaCCACGACgcaguuCCGCa- -3' miRNA: 3'- gaCGUGUGGAA--GGUGCUGau----GGCGgg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 94836 | 0.69 | 0.750523 |
Target: 5'- gUGCGCACCgagCGCGGCccgagcgGgCGCCCg -3' miRNA: 3'- gACGUGUGGaagGUGCUGa------UgGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 58414 | 0.69 | 0.750523 |
Target: 5'- aUGUACGCCa-UCGCGGCggcGCCGCUCc -3' miRNA: 3'- gACGUGUGGaaGGUGCUGa--UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 72935 | 0.69 | 0.750523 |
Target: 5'- -cGCACACCaUCgACGGC--CgGCCCa -3' miRNA: 3'- gaCGUGUGGaAGgUGCUGauGgCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 54151 | 0.69 | 0.769707 |
Target: 5'- gUGuCGCGCCcggugUCCACGACcGCCugGCUCg -3' miRNA: 3'- gAC-GUGUGGa----AGGUGCUGaUGG--CGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 115624 | 0.69 | 0.769707 |
Target: 5'- -cGCcCGCCggCgGCGGCgcgGCCGCCa -3' miRNA: 3'- gaCGuGUGGaaGgUGCUGa--UGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 57527 | 0.69 | 0.760172 |
Target: 5'- -cGCGCGUCUUCCugGGCcuggACCGCa- -3' miRNA: 3'- gaCGUGUGGAAGGugCUGa---UGGCGgg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 24651 | 0.69 | 0.797527 |
Target: 5'- -cGCGCucgcgGCCUUCCugGAC-ACCgagGCCUu -3' miRNA: 3'- gaCGUG-----UGGAAGGugCUGaUGG---CGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 24257 | 0.69 | 0.797527 |
Target: 5'- -aGCACgaguucGCCUUCCACGuCaGCUGgCCg -3' miRNA: 3'- gaCGUG------UGGAAGGUGCuGaUGGCgGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 124463 | 0.69 | 0.788393 |
Target: 5'- aUGCACucauCCgcCCugGACauggugaacGCCGCCCu -3' miRNA: 3'- gACGUGu---GGaaGGugCUGa--------UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 79016 | 0.69 | 0.788393 |
Target: 5'- -cGCGCACCgagaGCGACgaauCCgGCCCg -3' miRNA: 3'- gaCGUGUGGaaggUGCUGau--GG-CGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 35106 | 0.69 | 0.788393 |
Target: 5'- -cGCGCAUCgUCCgcGCGGCgcggaCGCCCa -3' miRNA: 3'- gaCGUGUGGaAGG--UGCUGaug--GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 94151 | 0.69 | 0.788393 |
Target: 5'- -gGCgGCGCCUccCCACGACggagaACCGCUUg -3' miRNA: 3'- gaCG-UGUGGAa-GGUGCUGa----UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 28978 | 0.69 | 0.787472 |
Target: 5'- gUGCGCAgCgaCUgcgggcaGCGGCgGCCGCCCa -3' miRNA: 3'- gACGUGUgGaaGG-------UGCUGaUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 45310 | 0.69 | 0.779117 |
Target: 5'- -cGCACACCgggaCCGCGccCU-CCGCCUc -3' miRNA: 3'- gaCGUGUGGaa--GGUGCu-GAuGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 20146 | 0.69 | 0.769707 |
Target: 5'- -gGCGCGC--UCCACG-CUGCCGCaggCCg -3' miRNA: 3'- gaCGUGUGgaAGGUGCuGAUGGCG---GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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