Results 1 - 20 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25699 | 5' | -55.5 | NC_005337.1 | + | 24555 | 1.11 | 0.002206 |
Target: 5'- gCUGCACACCUUCCACGACUACCGCCCc -3' miRNA: 3'- -GACGUGUGGAAGGUGCUGAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 100862 | 0.85 | 0.111288 |
Target: 5'- -aGCGCACCaUCCACGGCgGCCGCCa -3' miRNA: 3'- gaCGUGUGGaAGGUGCUGaUGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 43959 | 0.8 | 0.222271 |
Target: 5'- -cGCGCACCaUCUACGGCgGCgCGCCCg -3' miRNA: 3'- gaCGUGUGGaAGGUGCUGaUG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 10434 | 0.8 | 0.233456 |
Target: 5'- aUGCACGCCgcgaacgCCGgGACggaGCCGCCCa -3' miRNA: 3'- gACGUGUGGaa-----GGUgCUGa--UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 124046 | 0.8 | 0.251118 |
Target: 5'- -cGCGCGCCUgCCGCGGCUggaGCUGCCa -3' miRNA: 3'- gaCGUGUGGAaGGUGCUGA---UGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 97975 | 0.79 | 0.276363 |
Target: 5'- gUGCGCGCCaUCCGCGAC-ACCGUggCCg -3' miRNA: 3'- gACGUGUGGaAGGUGCUGaUGGCG--GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 77834 | 0.79 | 0.282983 |
Target: 5'- -gGC-CACCgcgcgUCCACGcGCUGCUGCCCg -3' miRNA: 3'- gaCGuGUGGa----AGGUGC-UGAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 7234 | 0.78 | 0.289728 |
Target: 5'- gUGCGCACC-UCCGCGcCcGCCGCCa -3' miRNA: 3'- gACGUGUGGaAGGUGCuGaUGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 98950 | 0.78 | 0.289728 |
Target: 5'- -cGCACGCCUgggUCCGCGGC-GCCGUCUu -3' miRNA: 3'- gaCGUGUGGA---AGGUGCUGaUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 131096 | 0.78 | 0.302889 |
Target: 5'- uCUGCGCGCUggCCAUGgggcugaACUACCGCCUc -3' miRNA: 3'- -GACGUGUGGaaGGUGC-------UGAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 91482 | 0.77 | 0.348223 |
Target: 5'- -cGUGCGCCg-CCACGaaggucacGCUGCCGCCCg -3' miRNA: 3'- gaCGUGUGGaaGGUGC--------UGAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 78102 | 0.76 | 0.377994 |
Target: 5'- -cGCGCGCUgaggUCCAgGACUacggcgucggccuuGCCGCCCc -3' miRNA: 3'- gaCGUGUGGa---AGGUgCUGA--------------UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 69120 | 0.76 | 0.380482 |
Target: 5'- uCUGCGggcgaGCCgcggUCCACGGCgGCCGCCUu -3' miRNA: 3'- -GACGUg----UGGa---AGGUGCUGaUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 103514 | 0.76 | 0.388852 |
Target: 5'- gUGCA-GCgCUUCCGCacGCUGCCGCCCg -3' miRNA: 3'- gACGUgUG-GAAGGUGc-UGAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 128500 | 0.76 | 0.405952 |
Target: 5'- gUGCGuCGCgUacguggUCgCGCGGCUGCCGCCCg -3' miRNA: 3'- gACGU-GUGgA------AG-GUGCUGAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 22712 | 0.76 | 0.405952 |
Target: 5'- aUGuCGCACCUcgUCUACGGC-ACCGCCg -3' miRNA: 3'- gAC-GUGUGGA--AGGUGCUGaUGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 69914 | 0.76 | 0.414677 |
Target: 5'- cCUGCGCGCgCUggaCACGGCUguguACCGCCg -3' miRNA: 3'- -GACGUGUG-GAag-GUGCUGA----UGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 64554 | 0.76 | 0.414677 |
Target: 5'- ---gGCACCUUCCugGACcgcgugGCCGCCa -3' miRNA: 3'- gacgUGUGGAAGGugCUGa-----UGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 122619 | 0.75 | 0.432468 |
Target: 5'- cCUGCuggaGCGCCUguUCCGCGAgcACCGCCg -3' miRNA: 3'- -GACG----UGUGGA--AGGUGCUgaUGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 6345 | 0.74 | 0.498016 |
Target: 5'- -cGCGCACCgcgUCCGCGuACU--UGCCCa -3' miRNA: 3'- gaCGUGUGGa--AGGUGC-UGAugGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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