miRNA display CGI


Results 81 - 100 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 94836 0.69 0.750523
Target:  5'- gUGCGCACCgagCGCGGCccgagcgGgCGCCCg -3'
miRNA:   3'- gACGUGUGGaagGUGCUGa------UgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 53067 0.69 0.750523
Target:  5'- -cGgACACCgaCUACGACUuCUGCCUg -3'
miRNA:   3'- gaCgUGUGGaaGGUGCUGAuGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 67342 0.69 0.750523
Target:  5'- --aCACGCCcUCCACGAUgGCgcaGCCCa -3'
miRNA:   3'- gacGUGUGGaAGGUGCUGaUGg--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 16040 0.69 0.750523
Target:  5'- gCUGCgGCGCCUgccgCCGCGcggGCCGCUg -3'
miRNA:   3'- -GACG-UGUGGAa---GGUGCugaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 79523 0.69 0.750523
Target:  5'- -aGCACGCCUucuUCUugGACaucaUGCgGUCCu -3'
miRNA:   3'- gaCGUGUGGA---AGGugCUG----AUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 1982 0.69 0.750523
Target:  5'- gUGCACGCCgggUCgGCGucaGCUGCgGCUUg -3'
miRNA:   3'- gACGUGUGGa--AGgUGC---UGAUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 72935 0.69 0.750523
Target:  5'- -cGCACACCaUCgACGGC--CgGCCCa -3'
miRNA:   3'- gaCGUGUGGaAGgUGCUGauGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 56822 0.69 0.759212
Target:  5'- -cGCACGCCa-CCACGAgaACCuccacauGCCCu -3'
miRNA:   3'- gaCGUGUGGaaGGUGCUgaUGG-------CGGG- -5'
25699 5' -55.5 NC_005337.1 + 68383 0.69 0.760172
Target:  5'- -cGCACGCCguccucggUCACGGCgACCGCggCCa -3'
miRNA:   3'- gaCGUGUGGaa------GGUGCUGaUGGCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 105760 0.69 0.760172
Target:  5'- -aGUGCGCCUgccCCACGcAgUGCCGCgCg -3'
miRNA:   3'- gaCGUGUGGAa--GGUGC-UgAUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 57527 0.69 0.760172
Target:  5'- -cGCGCGUCUUCCugGGCcuggACCGCa- -3'
miRNA:   3'- gaCGUGUGGAAGGugCUGa---UGGCGgg -5'
25699 5' -55.5 NC_005337.1 + 54151 0.69 0.769707
Target:  5'- gUGuCGCGCCcggugUCCACGACcGCCugGCUCg -3'
miRNA:   3'- gAC-GUGUGGa----AGGUGCUGaUGG--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 123810 0.69 0.769707
Target:  5'- uCUGCGcCGCCcacgugUUCCugGGCggcuCCGUCCc -3'
miRNA:   3'- -GACGU-GUGG------AAGGugCUGau--GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 20146 0.69 0.769707
Target:  5'- -gGCGCGC--UCCACG-CUGCCGCaggCCg -3'
miRNA:   3'- gaCGUGUGgaAGGUGCuGAUGGCG---GG- -5'
25699 5' -55.5 NC_005337.1 + 54678 0.69 0.769707
Target:  5'- -aGCGCACCUUCagCACG-CUGaaGCUCg -3'
miRNA:   3'- gaCGUGUGGAAG--GUGCuGAUggCGGG- -5'
25699 5' -55.5 NC_005337.1 + 57091 0.69 0.769707
Target:  5'- gCUGUuCGCCaUCCGCGGgUGgCGCCg -3'
miRNA:   3'- -GACGuGUGGaAGGUGCUgAUgGCGGg -5'
25699 5' -55.5 NC_005337.1 + 108306 0.69 0.769707
Target:  5'- gCUGCGCuCCUUCCugGACg--CGCg- -3'
miRNA:   3'- -GACGUGuGGAAGGugCUGaugGCGgg -5'
25699 5' -55.5 NC_005337.1 + 115624 0.69 0.769707
Target:  5'- -cGCcCGCCggCgGCGGCgcgGCCGCCa -3'
miRNA:   3'- gaCGuGUGGaaGgUGCUGa--UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 131340 0.69 0.773486
Target:  5'- aUGCGCGCCgugcgcgucggcacUCCgGCGAC-GCCGCUCc -3'
miRNA:   3'- gACGUGUGGa-------------AGG-UGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 122331 0.69 0.779117
Target:  5'- aUGCGCGuCCcUCgACGGC-GCgCGCCCg -3'
miRNA:   3'- gACGUGU-GGaAGgUGCUGaUG-GCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.