miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 17035 0.66 0.912084
Target:  5'- aCUGCGuCGCgUUCCGCGcgguCUGCaCGUUCc -3'
miRNA:   3'- -GACGU-GUGgAAGGUGCu---GAUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133333 0.66 0.912084
Target:  5'- -cGC-CGCCagcaugUCCGCG-CUccGCCGCCUc -3'
miRNA:   3'- gaCGuGUGGa-----AGGUGCuGA--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 132932 0.66 0.912084
Target:  5'- -cGU-CACCUUCgGCGAC--CCGCUCu -3'
miRNA:   3'- gaCGuGUGGAAGgUGCUGauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 67124 0.66 0.912084
Target:  5'- uUGCGCAUCacggUCGCGAagUGCCGCgCg -3'
miRNA:   3'- gACGUGUGGaa--GGUGCUg-AUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 98146 0.66 0.912084
Target:  5'- -cGCACGCCgcgCACGACagGgUGCCUg -3'
miRNA:   3'- gaCGUGUGGaagGUGCUGa-UgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 37968 0.66 0.912084
Target:  5'- -aGguCACCUUCC-CGGC-GCUGgCCg -3'
miRNA:   3'- gaCguGUGGAAGGuGCUGaUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 57380 0.66 0.912084
Target:  5'- gUGU--GCC-UCgGCGAgCUGCUGCCCg -3'
miRNA:   3'- gACGugUGGaAGgUGCU-GAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 68469 0.66 0.912084
Target:  5'- ---gGCACCUUCgACG-CcGCCGCaCCg -3'
miRNA:   3'- gacgUGUGGAAGgUGCuGaUGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 110888 0.66 0.912084
Target:  5'- -gGCACAgCagcaCCAgCGACacguugaggUGCCGCCCg -3'
miRNA:   3'- gaCGUGUgGaa--GGU-GCUG---------AUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 49162 0.66 0.912084
Target:  5'- cCUGgACACCUUCUuu-ACUgaauuuccGCCGUCCg -3'
miRNA:   3'- -GACgUGUGGAAGGugcUGA--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 90880 0.66 0.912084
Target:  5'- -gGC-CACCgUCUugGuGCccACCGCCCg -3'
miRNA:   3'- gaCGuGUGGaAGGugC-UGa-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 49360 0.66 0.912084
Target:  5'- uCUGCgGCGCgUgCgGCGGCUACUGUUCg -3'
miRNA:   3'- -GACG-UGUGgAaGgUGCUGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 90315 0.66 0.912084
Target:  5'- -gGCGCGCCgccguagauggUgCGCGGgaACCGCCa -3'
miRNA:   3'- gaCGUGUGGa----------AgGUGCUgaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 92334 0.66 0.912084
Target:  5'- -cGCGCACCgUCCA-----GCCGUCCg -3'
miRNA:   3'- gaCGUGUGGaAGGUgcugaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 104845 0.66 0.912084
Target:  5'- uCUGCGagaACUg-CgGCGACaucGCCGCCCg -3'
miRNA:   3'- -GACGUg--UGGaaGgUGCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133333 0.66 0.912084
Target:  5'- -cGC-CGCCagcaugUCCGCG-CUccGCCGCCUc -3'
miRNA:   3'- gaCGuGUGGa-----AGGUGCuGA--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 39562 0.66 0.912084
Target:  5'- -cGcCACGCacgUCUACGAC-ACCGgCCg -3'
miRNA:   3'- gaC-GUGUGga-AGGUGCUGaUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 60110 0.66 0.908447
Target:  5'- -aGCGCGCCUcCCGCaGcacggcggugaccucGCUGCCGUgCg -3'
miRNA:   3'- gaCGUGUGGAaGGUG-C---------------UGAUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 97776 0.66 0.905975
Target:  5'- -cGuCGCGCCgagcgCCGCGGCcGCgGCCa -3'
miRNA:   3'- gaC-GUGUGGaa---GGUGCUGaUGgCGGg -5'
25699 5' -55.5 NC_005337.1 + 24429 0.66 0.905975
Target:  5'- -cGUGCACCUcaaguUCgCGCaGACcGCCGCCg -3'
miRNA:   3'- gaCGUGUGGA-----AG-GUG-CUGaUGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.