miRNA display CGI


Results 41 - 60 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 24429 0.66 0.905975
Target:  5'- -cGUGCACCUcaaguUCgCGCaGACcGCCGCCg -3'
miRNA:   3'- gaCGUGUGGA-----AG-GUG-CUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 128165 0.66 0.905975
Target:  5'- -cGgGCugCUgugUCCguGCGcACUGCCGCCg -3'
miRNA:   3'- gaCgUGugGA---AGG--UGC-UGAUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 18912 0.66 0.905975
Target:  5'- gUGCucccCACCacgUCCGCGggcACgcagauCCGCCCg -3'
miRNA:   3'- gACGu---GUGGa--AGGUGC---UGau----GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 73754 0.66 0.905975
Target:  5'- aUGUcCACgUUCCGgcagacCGugUACCuGCCCg -3'
miRNA:   3'- gACGuGUGgAAGGU------GCugAUGG-CGGG- -5'
25699 5' -55.5 NC_005337.1 + 24812 0.66 0.905975
Target:  5'- ---gGCGCCagUUCCGCGACUuccUCGCCg -3'
miRNA:   3'- gacgUGUGG--AAGGUGCUGAu--GGCGGg -5'
25699 5' -55.5 NC_005337.1 + 130985 0.66 0.905975
Target:  5'- -cGCGCGCUacgaCACGAC-GCCGCUg -3'
miRNA:   3'- gaCGUGUGGaag-GUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 14048 0.66 0.905975
Target:  5'- -cGCACugC-UCgGCGAUgcuguCCGCCUc -3'
miRNA:   3'- gaCGUGugGaAGgUGCUGau---GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 55893 0.66 0.905351
Target:  5'- -gGCGCAgCaUCCGCGAggGCCucagcgucacgcuGCCCa -3'
miRNA:   3'- gaCGUGUgGaAGGUGCUgaUGG-------------CGGG- -5'
25699 5' -55.5 NC_005337.1 + 78145 0.66 0.899629
Target:  5'- gCUGCACGCCgcgCaCGCuGGCgaUGCCGUgCg -3'
miRNA:   3'- -GACGUGUGGaa-G-GUG-CUG--AUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 77003 0.66 0.899629
Target:  5'- -cGCGCGCCggccCCGCG-CgGCCccguGCCCg -3'
miRNA:   3'- gaCGUGUGGaa--GGUGCuGaUGG----CGGG- -5'
25699 5' -55.5 NC_005337.1 + 3028 0.66 0.899629
Target:  5'- gUGCGCGCCgaugUgCGCGACcACguaCGCCa -3'
miRNA:   3'- gACGUGUGGa---AgGUGCUGaUG---GCGGg -5'
25699 5' -55.5 NC_005337.1 + 95141 0.66 0.899629
Target:  5'- uCUGCAuCACCaggcugUCCACGucgaUGCgacaGCCCa -3'
miRNA:   3'- -GACGU-GUGGa-----AGGUGCug--AUGg---CGGG- -5'
25699 5' -55.5 NC_005337.1 + 2871 0.66 0.899629
Target:  5'- -cGCGCGCCagcgggaaCACGAUcACgGCCCc -3'
miRNA:   3'- gaCGUGUGGaag-----GUGCUGaUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 43077 0.66 0.899629
Target:  5'- -gGCGCGCCcgUCCGCaucGCgg-CGCCCg -3'
miRNA:   3'- gaCGUGUGGa-AGGUGc--UGaugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 131208 0.66 0.899629
Target:  5'- gUGCGCGgagUCCGCG-CUaGCCGCCg -3'
miRNA:   3'- gACGUGUggaAGGUGCuGA-UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 12302 0.66 0.899629
Target:  5'- -cGCGCACgaugUCCGCGu---UCGCCCg -3'
miRNA:   3'- gaCGUGUGga--AGGUGCugauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 98402 0.66 0.899629
Target:  5'- -cGCACACgUcccgcaguUCCGCGcgu-CCGCCCc -3'
miRNA:   3'- gaCGUGUGgA--------AGGUGCugauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 94238 0.66 0.899629
Target:  5'- -gGCGCACCg-CgACGACgcCCGCUa -3'
miRNA:   3'- gaCGUGUGGaaGgUGCUGauGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 56375 0.66 0.899629
Target:  5'- gUGCACGCgCUg-CGCGugUACUGCagCCu -3'
miRNA:   3'- gACGUGUG-GAagGUGCugAUGGCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 110081 0.66 0.898331
Target:  5'- -cGCGCGCCUcgCCGguaacggcgcgaGGCUGCgCGUCCa -3'
miRNA:   3'- gaCGUGUGGAa-GGUg-----------CUGAUG-GCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.