Results 61 - 80 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25699 | 5' | -55.5 | NC_005337.1 | + | 23822 | 0.66 | 0.897024 |
Target: 5'- gCUGCACGCCUcggaggUCCugcccgcguucguCGACUGCCucGUCg -3' miRNA: 3'- -GACGUGUGGA------AGGu------------GCUGAUGG--CGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 42747 | 0.66 | 0.895708 |
Target: 5'- gCUGCugACCgacgCCucucgcgcccgcuuCGAC-GCCGCCUa -3' miRNA: 3'- -GACGugUGGaa--GGu-------------GCUGaUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 50303 | 0.66 | 0.893048 |
Target: 5'- gUGCcCGCCcgcgCCGCcGCUgcccugcgcggACCGCCCg -3' miRNA: 3'- gACGuGUGGaa--GGUGcUGA-----------UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 103092 | 0.66 | 0.893048 |
Target: 5'- -aGCuCACCaagaaggUCUGCGACUAcauCCGCUCg -3' miRNA: 3'- gaCGuGUGGa------AGGUGCUGAU---GGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 74396 | 0.66 | 0.893048 |
Target: 5'- -cGUACAUC-UCCGgGGCUcuggccACCGCCa -3' miRNA: 3'- gaCGUGUGGaAGGUgCUGA------UGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 9460 | 0.66 | 0.893048 |
Target: 5'- gUGCggaGCACC-UCCuCG-CUGCgGCCCc -3' miRNA: 3'- gACG---UGUGGaAGGuGCuGAUGgCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 29583 | 0.66 | 0.893048 |
Target: 5'- -cGUugGCCUgccggaugagCUugGuCUugCGCCCg -3' miRNA: 3'- gaCGugUGGAa---------GGugCuGAugGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 50031 | 0.66 | 0.893048 |
Target: 5'- -cGCACACgUcgUCCAgGAagaUGCCGCgCu -3' miRNA: 3'- gaCGUGUGgA--AGGUgCUg--AUGGCGgG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 103231 | 0.66 | 0.893048 |
Target: 5'- gCUGCA-ACCUgCCGCuGgUGCgCGCCCg -3' miRNA: 3'- -GACGUgUGGAaGGUGcUgAUG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 14347 | 0.66 | 0.893048 |
Target: 5'- aCUGUcuauGCAC--UCCACGACga-UGCCCg -3' miRNA: 3'- -GACG----UGUGgaAGGUGCUGaugGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 13011 | 0.66 | 0.893048 |
Target: 5'- gUGCAgGCCUgCgACGACUACUuCaCCg -3' miRNA: 3'- gACGUgUGGAaGgUGCUGAUGGcG-GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 127990 | 0.66 | 0.893048 |
Target: 5'- gCUGCaACGCCga-CACGAC-GCUGCUg -3' miRNA: 3'- -GACG-UGUGGaagGUGCUGaUGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 122754 | 0.66 | 0.893048 |
Target: 5'- -cGCACGCCgaCCGCgugGAgUACUGgCCg -3' miRNA: 3'- gaCGUGUGGaaGGUG---CUgAUGGCgGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 75345 | 0.66 | 0.893048 |
Target: 5'- -aGCAgGuCCUcgUCCACGGucGCCGCgCCg -3' miRNA: 3'- gaCGUgU-GGA--AGGUGCUgaUGGCG-GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 35274 | 0.67 | 0.886235 |
Target: 5'- -cGCGCACCUcggggggcggcUCCAccuCGGCc-CCGCUCg -3' miRNA: 3'- gaCGUGUGGA-----------AGGU---GCUGauGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 89585 | 0.67 | 0.886235 |
Target: 5'- -cGUACGCCUUcugcaucucggCCACGcCUAucucggagUCGCCCa -3' miRNA: 3'- gaCGUGUGGAA-----------GGUGCuGAU--------GGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 53242 | 0.67 | 0.886235 |
Target: 5'- cCUGCGCAUCcccgccaucUCCACgcccgGACUucGCgCGCCCg -3' miRNA: 3'- -GACGUGUGGa--------AGGUG-----CUGA--UG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 46323 | 0.67 | 0.886235 |
Target: 5'- gUGCagGCGCaggaggUCCG-GGCUGCCGCCg -3' miRNA: 3'- gACG--UGUGga----AGGUgCUGAUGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 29032 | 0.67 | 0.886235 |
Target: 5'- -gGCGgGCCUcgUCCAUGAgccgGgCGCCCg -3' miRNA: 3'- gaCGUgUGGA--AGGUGCUga--UgGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 24159 | 0.67 | 0.886235 |
Target: 5'- -aGcCAUGgCUUCCuACGACaaUACCGCCUu -3' miRNA: 3'- gaC-GUGUgGAAGG-UGCUG--AUGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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