miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 572 0.68 0.823985
Target:  5'- -cGUACGCCgcggCCGCG-CggaaGCCGCCg -3'
miRNA:   3'- gaCGUGUGGaa--GGUGCuGa---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 572 0.68 0.823985
Target:  5'- -cGUACGCCgcggCCGCG-CggaaGCCGCCg -3'
miRNA:   3'- gaCGUGUGGaa--GGUGCuGa---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 803 0.69 0.797527
Target:  5'- -gGCAgACCagcUCCGCGGa-GCCGUCCg -3'
miRNA:   3'- gaCGUgUGGa--AGGUGCUgaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 803 0.69 0.797527
Target:  5'- -gGCAgACCagcUCCGCGGa-GCCGUCCg -3'
miRNA:   3'- gaCGUgUGGa--AGGUGCUgaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 1646 0.73 0.54743
Target:  5'- -cGCGCGCCcgCgGCGACgagcuugGCCGCCg -3'
miRNA:   3'- gaCGUGUGGaaGgUGCUGa------UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 1982 0.69 0.750523
Target:  5'- gUGCACGCCgggUCgGCGucaGCUGCgGCUUg -3'
miRNA:   3'- gACGUGUGGa--AGgUGC---UGAUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 2871 0.66 0.899629
Target:  5'- -cGCGCGCCagcgggaaCACGAUcACgGCCCc -3'
miRNA:   3'- gaCGUGUGGaag-----GUGCUGaUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 3028 0.66 0.899629
Target:  5'- gUGCGCGCCgaugUgCGCGACcACguaCGCCa -3'
miRNA:   3'- gACGUGUGGa---AgGUGCUGaUG---GCGGg -5'
25699 5' -55.5 NC_005337.1 + 3084 0.67 0.879194
Target:  5'- -cGCGCACCUcggcgacggCCAgCGACU-CCGCgaCCg -3'
miRNA:   3'- gaCGUGUGGAa--------GGU-GCUGAuGGCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 3314 0.7 0.700881
Target:  5'- uUGCGCACg-UCCACGGCca-CGCCg -3'
miRNA:   3'- gACGUGUGgaAGGUGCUGaugGCGGg -5'
25699 5' -55.5 NC_005337.1 + 6003 0.67 0.87193
Target:  5'- uUGCAgACCg-CCGCGugcaGCggcguCCGCCCa -3'
miRNA:   3'- gACGUgUGGaaGGUGC----UGau---GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 6306 0.68 0.823985
Target:  5'- -aGCGCACCUcgCgCAUGGCgcggaucuCCGCCUc -3'
miRNA:   3'- gaCGUGUGGAa-G-GUGCUGau------GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 6345 0.74 0.498016
Target:  5'- -cGCGCACCgcgUCCGCGuACU--UGCCCa -3'
miRNA:   3'- gaCGUGUGGa--AGGUGC-UGAugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 6682 0.71 0.660053
Target:  5'- -aGCACgACUcggcgacgUCCACGGCUG-CGCCCg -3'
miRNA:   3'- gaCGUG-UGGa-------AGGUGCUGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 7234 0.78 0.289728
Target:  5'- gUGCGCACC-UCCGCGcCcGCCGCCa -3'
miRNA:   3'- gACGUGUGGaAGGUGCuGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 8105 0.68 0.815332
Target:  5'- aCUGCGCugGCaacaCCAuCGACUucgcaguucucGCCGCCCa -3'
miRNA:   3'- -GACGUG--UGgaa-GGU-GCUGA-----------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 8303 0.67 0.87193
Target:  5'- uCUGCagccGCGCgUUCCGCG-CguucaCGCCCa -3'
miRNA:   3'- -GACG----UGUGgAAGGUGCuGaug--GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 9460 0.66 0.893048
Target:  5'- gUGCggaGCACC-UCCuCG-CUGCgGCCCc -3'
miRNA:   3'- gACG---UGUGGaAGGuGCuGAUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 9961 0.71 0.649768
Target:  5'- aUGaGCGCCUgcgCCGCGACgagGCCGCguCCu -3'
miRNA:   3'- gACgUGUGGAa--GGUGCUGa--UGGCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 10434 0.8 0.233456
Target:  5'- aUGCACGCCgcgaacgCCGgGACggaGCCGCCCa -3'
miRNA:   3'- gACGUGUGGaa-----GGUgCUGa--UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.