miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 18912 0.66 0.905975
Target:  5'- gUGCucccCACCacgUCCGCGggcACgcagauCCGCCCg -3'
miRNA:   3'- gACGu---GUGGa--AGGUGC---UGau----GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 19720 0.67 0.886235
Target:  5'- uCUGCggccGCGCC-UCCACGAUgGCC-UCCa -3'
miRNA:   3'- -GACG----UGUGGaAGGUGCUGaUGGcGGG- -5'
25699 5' -55.5 NC_005337.1 + 20146 0.69 0.769707
Target:  5'- -gGCGCGC--UCCACG-CUGCCGCaggCCg -3'
miRNA:   3'- gaCGUGUGgaAGGUGCuGAUGGCG---GG- -5'
25699 5' -55.5 NC_005337.1 + 21677 0.7 0.730917
Target:  5'- gCUGCACuACCUggUCACGACguuuCCGCacgCCg -3'
miRNA:   3'- -GACGUG-UGGAa-GGUGCUGau--GGCG---GG- -5'
25699 5' -55.5 NC_005337.1 + 22712 0.76 0.405952
Target:  5'- aUGuCGCACCUcgUCUACGGC-ACCGCCg -3'
miRNA:   3'- gAC-GUGUGGA--AGGUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 23064 0.72 0.618858
Target:  5'- -cGCGCGCCggaaCGCGGCgGCCguGCCCg -3'
miRNA:   3'- gaCGUGUGGaag-GUGCUGaUGG--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 23621 0.7 0.690739
Target:  5'- -aGCGCAUCUgCUACGACU-UCGCCg -3'
miRNA:   3'- gaCGUGUGGAaGGUGCUGAuGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 23622 0.66 0.917376
Target:  5'- gUGaACcCCUUCCACcGCUucgcgguGCUGCCCg -3'
miRNA:   3'- gACgUGuGGAAGGUGcUGA-------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 23822 0.66 0.897024
Target:  5'- gCUGCACGCCUcggaggUCCugcccgcguucguCGACUGCCucGUCg -3'
miRNA:   3'- -GACGUGUGGA------AGGu------------GCUGAUGG--CGGg -5'
25699 5' -55.5 NC_005337.1 + 23890 0.72 0.587016
Target:  5'- -cGCGCAUCagcaaCCccacgcccgugggACGGCUGCCGCCCu -3'
miRNA:   3'- gaCGUGUGGaa---GG-------------UGCUGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 23917 0.66 0.917952
Target:  5'- -cGCGCGCCcgcgcgcCCGCGGCaggcgcgcgcgACgCGCCCg -3'
miRNA:   3'- gaCGUGUGGaa-----GGUGCUGa----------UG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 24159 0.67 0.886235
Target:  5'- -aGcCAUGgCUUCCuACGACaaUACCGCCUu -3'
miRNA:   3'- gaC-GUGUgGAAGG-UGCUG--AUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 24257 0.69 0.797527
Target:  5'- -aGCACgaguucGCCUUCCACGuCaGCUGgCCg -3'
miRNA:   3'- gaCGUG------UGGAAGGUGCuGaUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 24429 0.66 0.905975
Target:  5'- -cGUGCACCUcaaguUCgCGCaGACcGCCGCCg -3'
miRNA:   3'- gaCGUGUGGA-----AG-GUG-CUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 24555 1.11 0.002206
Target:  5'- gCUGCACACCUUCCACGACUACCGCCCc -3'
miRNA:   3'- -GACGUGUGGAAGGUGCUGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 24651 0.69 0.797527
Target:  5'- -cGCGCucgcgGCCUUCCugGAC-ACCgagGCCUu -3'
miRNA:   3'- gaCGUG-----UGGAAGGugCUGaUGG---CGGG- -5'
25699 5' -55.5 NC_005337.1 + 24711 0.73 0.527451
Target:  5'- -cGUGCACCccgcggagUUCCGCGGgUACgCGCCCu -3'
miRNA:   3'- gaCGUGUGG--------AAGGUGCUgAUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 24812 0.66 0.905975
Target:  5'- ---gGCGCCagUUCCGCGACUuccUCGCCg -3'
miRNA:   3'- gacgUGUGG--AAGGUGCUGAu--GGCGGg -5'
25699 5' -55.5 NC_005337.1 + 25055 0.68 0.815332
Target:  5'- gCUGCGCGCCgugcgggcggcgUUCgucaagcugCGCGACgccgagcuCCGCCCg -3'
miRNA:   3'- -GACGUGUGG------------AAG---------GUGCUGau------GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 26707 0.67 0.864448
Target:  5'- -aGCACGCgggcgaagaCCGCGGCguUGCCGUCCu -3'
miRNA:   3'- gaCGUGUGgaa------GGUGCUG--AUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.