miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 27282 0.67 0.886235
Target:  5'- uCUGCGCccGCCUugUCCACGAC-GCagaaGCUUa -3'
miRNA:   3'- -GACGUG--UGGA--AGGUGCUGaUGg---CGGG- -5'
25699 5' -55.5 NC_005337.1 + 27587 0.7 0.709959
Target:  5'- gUGCACGCUcgCCACGAggcacagcuccucCUcccGCCGCUCg -3'
miRNA:   3'- gACGUGUGGaaGGUGCU-------------GA---UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 28036 0.74 0.507749
Target:  5'- cCUGC-CGCCggCaCGCGACcGCCGCCa -3'
miRNA:   3'- -GACGuGUGGaaG-GUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 28978 0.69 0.787472
Target:  5'- gUGCGCAgCgaCUgcgggcaGCGGCgGCCGCCCa -3'
miRNA:   3'- gACGUGUgGaaGG-------UGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 29032 0.67 0.886235
Target:  5'- -gGCGgGCCUcgUCCAUGAgccgGgCGCCCg -3'
miRNA:   3'- gaCGUgUGGA--AGGUGCUga--UgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 29133 0.72 0.577822
Target:  5'- -aGCAgCACCaugUCgGCGACgGCCGUCCg -3'
miRNA:   3'- gaCGU-GUGGa--AGgUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 29558 0.71 0.680548
Target:  5'- aUGC-CGCCg-CCGCGGCgGCgGCCCu -3'
miRNA:   3'- gACGuGUGGaaGGUGCUGaUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 29583 0.66 0.893048
Target:  5'- -cGUugGCCUgccggaugagCUugGuCUugCGCCCg -3'
miRNA:   3'- gaCGugUGGAa---------GGugCuGAugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 29966 0.68 0.840754
Target:  5'- -cGCACGCagagcgccgCCGCGcccucGCggACCGCCCg -3'
miRNA:   3'- gaCGUGUGgaa------GGUGC-----UGa-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 30407 0.72 0.59829
Target:  5'- -gGC-CGCCgcgcUCCGCGaACUGCCGCUUg -3'
miRNA:   3'- gaCGuGUGGa---AGGUGC-UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 30922 0.7 0.724964
Target:  5'- -aGCACGCCgUUCUcgacaccagcagcggGCGGgUgaGCCGCCCg -3'
miRNA:   3'- gaCGUGUGG-AAGG---------------UGCUgA--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 32806 0.68 0.80651
Target:  5'- -cGCcuGCGCCUggUCCACGcACU-CgCGCCCc -3'
miRNA:   3'- gaCG--UGUGGA--AGGUGC-UGAuG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 32847 0.67 0.856753
Target:  5'- -aGCGCACCg-CCACGAUguucaGCUucuuGCCCu -3'
miRNA:   3'- gaCGUGUGGaaGGUGCUGa----UGG----CGGG- -5'
25699 5' -55.5 NC_005337.1 + 34028 0.69 0.797527
Target:  5'- -cGCucgGCGCCcUCCACGAgcUUGCCGUCg -3'
miRNA:   3'- gaCG---UGUGGaAGGUGCU--GAUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 34617 0.67 0.864448
Target:  5'- -gGCGCGCCcagCCgcGCGGCgaUGCCGCgCa -3'
miRNA:   3'- gaCGUGUGGaa-GG--UGCUG--AUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 34830 0.7 0.730917
Target:  5'- -cGCGCguccacgaggugGCCcacgCCGCGGCUcagcacgcacccGCCGCCCg -3'
miRNA:   3'- gaCGUG------------UGGaa--GGUGCUGA------------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 35106 0.69 0.788393
Target:  5'- -cGCGCAUCgUCCgcGCGGCgcggaCGCCCa -3'
miRNA:   3'- gaCGUGUGGaAGG--UGCUGaug--GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 35274 0.67 0.886235
Target:  5'- -cGCGCACCUcggggggcggcUCCAccuCGGCc-CCGCUCg -3'
miRNA:   3'- gaCGUGUGGA-----------AGGU---GCUGauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 35498 0.68 0.832462
Target:  5'- -aGCGCguuguACCggUCCACGGC-GCUGCCg -3'
miRNA:   3'- gaCGUG-----UGGa-AGGUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 36755 0.72 0.608565
Target:  5'- uCUGCGgGCCcUCCA-GGCUGCgCGCCa -3'
miRNA:   3'- -GACGUgUGGaAGGUgCUGAUG-GCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.