miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 36803 0.69 0.797527
Target:  5'- -aGUACGCCUcgaagaaggcgUCCACGACgcggACCaCCUu -3'
miRNA:   3'- gaCGUGUGGA-----------AGGUGCUGa---UGGcGGG- -5'
25699 5' -55.5 NC_005337.1 + 37968 0.66 0.912084
Target:  5'- -aGguCACCUUCC-CGGC-GCUGgCCg -3'
miRNA:   3'- gaCguGUGGAAGGuGCUGaUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 38688 0.68 0.815332
Target:  5'- gCUGCAC-CCggCCGaccccgGACUGCCcGUCCg -3'
miRNA:   3'- -GACGUGuGGaaGGUg-----CUGAUGG-CGGG- -5'
25699 5' -55.5 NC_005337.1 + 39562 0.66 0.912084
Target:  5'- -cGcCACGCacgUCUACGAC-ACCGgCCg -3'
miRNA:   3'- gaC-GUGUGga-AGGUGCUGaUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 39692 0.67 0.864448
Target:  5'- gUGCGCuuCUUCgacaCGCGGCUgGCCGCgCCc -3'
miRNA:   3'- gACGUGugGAAG----GUGCUGA-UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 39861 0.68 0.823985
Target:  5'- gCUGCuCGCC-UCCGCGugUGuguUUGCCUg -3'
miRNA:   3'- -GACGuGUGGaAGGUGCugAU---GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 40711 0.67 0.87193
Target:  5'- aUGCACGCCU---GCGACgccgagACCGUgCa -3'
miRNA:   3'- gACGUGUGGAaggUGCUGa-----UGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 41745 0.72 0.618858
Target:  5'- -cGCGCACCgcgUCCAUggGGCgGCCGCgCa -3'
miRNA:   3'- gaCGUGUGGa--AGGUG--CUGaUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 42747 0.66 0.895708
Target:  5'- gCUGCugACCgacgCCucucgcgcccgcuuCGAC-GCCGCCUa -3'
miRNA:   3'- -GACGugUGGaa--GGu-------------GCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 43077 0.66 0.899629
Target:  5'- -gGCGCGCCcgUCCGCaucGCgg-CGCCCg -3'
miRNA:   3'- gaCGUGUGGa-AGGUGc--UGaugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 43167 0.66 0.912084
Target:  5'- aUGCGCGCCgaCCG-GACcucGCCGCUg -3'
miRNA:   3'- gACGUGUGGaaGGUgCUGa--UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 43959 0.8 0.222271
Target:  5'- -cGCGCACCaUCUACGGCgGCgCGCCCg -3'
miRNA:   3'- gaCGUGUGGaAGGUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 44010 0.68 0.831622
Target:  5'- -aGCACGgUgUCCGCGuGCUACCgguaccuGCCCa -3'
miRNA:   3'- gaCGUGUgGaAGGUGC-UGAUGG-------CGGG- -5'
25699 5' -55.5 NC_005337.1 + 44346 0.67 0.856753
Target:  5'- -cGCGCgGCCcUCUgugaggagugggGCGACgccccGCCGCCCa -3'
miRNA:   3'- gaCGUG-UGGaAGG------------UGCUGa----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 45310 0.69 0.779117
Target:  5'- -cGCACACCgggaCCGCGccCU-CCGCCUc -3'
miRNA:   3'- gaCGUGUGGaa--GGUGCu-GAuGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 45947 0.65 0.921357
Target:  5'- -cGCGCGCCggcgcgcguggcgUCCACG-CUGaCGUCCc -3'
miRNA:   3'- gaCGUGUGGa------------AGGUGCuGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 46323 0.67 0.886235
Target:  5'- gUGCagGCGCaggaggUCCG-GGCUGCCGCCg -3'
miRNA:   3'- gACG--UGUGga----AGGUgCUGAUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 47550 0.72 0.59829
Target:  5'- -cGUGgGCCUgaugCCGCGACUgaccACCGCCg -3'
miRNA:   3'- gaCGUgUGGAa---GGUGCUGA----UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 48244 0.69 0.747607
Target:  5'- gCUGCACcgccgccauggaccGCC-UCCGCuGCUGCuaCGCCCg -3'
miRNA:   3'- -GACGUG--------------UGGaAGGUGcUGAUG--GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 49162 0.66 0.912084
Target:  5'- cCUGgACACCUUCUuu-ACUgaauuuccGCCGUCCg -3'
miRNA:   3'- -GACgUGUGGAAGGugcUGA--------UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.