miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 133403 0.69 0.797527
Target:  5'- -gGCGCGCuCUUCCGCccGGCcgcgcccgcGCUGCCCg -3'
miRNA:   3'- gaCGUGUG-GAAGGUG--CUGa--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133403 0.69 0.797527
Target:  5'- -gGCGCGCuCUUCCGCccGGCcgcgcccgcGCUGCCCg -3'
miRNA:   3'- gaCGUGUG-GAAGGUG--CUGa--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133333 0.66 0.912084
Target:  5'- -cGC-CGCCagcaugUCCGCG-CUccGCCGCCUc -3'
miRNA:   3'- gaCGuGUGGa-----AGGUGCuGA--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133333 0.66 0.912084
Target:  5'- -cGC-CGCCagcaugUCCGCG-CUccGCCGCCUc -3'
miRNA:   3'- gaCGuGUGGa-----AGGUGCuGA--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133154 0.67 0.864448
Target:  5'- -cGCGCGCgUgCUGCGGCUGCU-CCCg -3'
miRNA:   3'- gaCGUGUGgAaGGUGCUGAUGGcGGG- -5'
25699 5' -55.5 NC_005337.1 + 133154 0.67 0.864448
Target:  5'- -cGCGCGCgUgCUGCGGCUGCU-CCCg -3'
miRNA:   3'- gaCGUGUGgAaGGUGCUGAUGGcGGG- -5'
25699 5' -55.5 NC_005337.1 + 133083 0.73 0.537409
Target:  5'- aUGCGCGCCcgugCCGCG-CUcgcgcACCGCCUa -3'
miRNA:   3'- gACGUGUGGaa--GGUGCuGA-----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133012 0.73 0.557511
Target:  5'- -cGCGgGCCaUCCuGCGGCUgAUCGCCCg -3'
miRNA:   3'- gaCGUgUGGaAGG-UGCUGA-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 132932 0.66 0.912084
Target:  5'- -cGU-CACCUUCgGCGAC--CCGCUCu -3'
miRNA:   3'- gaCGuGUGGAAGgUGCUGauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 132057 0.67 0.848853
Target:  5'- cCUGCGCGCgCU--CGCGGCccggGCCGCgCCc -3'
miRNA:   3'- -GACGUGUG-GAagGUGCUGa---UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 131835 0.67 0.848853
Target:  5'- gCUGCACacguACCUgcaCUACGACggccCCGaCCCc -3'
miRNA:   3'- -GACGUG----UGGAa--GGUGCUGau--GGC-GGG- -5'
25699 5' -55.5 NC_005337.1 + 131340 0.69 0.773486
Target:  5'- aUGCGCGCCgugcgcgucggcacUCCgGCGAC-GCCGCUCc -3'
miRNA:   3'- gACGUGUGGa-------------AGG-UGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 131254 0.68 0.815332
Target:  5'- -cGCACAUCggcgCgCACGcGCUGCCggaGCCCg -3'
miRNA:   3'- gaCGUGUGGaa--G-GUGC-UGAUGG---CGGG- -5'
25699 5' -55.5 NC_005337.1 + 131208 0.66 0.899629
Target:  5'- gUGCGCGgagUCCGCG-CUaGCCGCCg -3'
miRNA:   3'- gACGUGUggaAGGUGCuGA-UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 131096 0.78 0.302889
Target:  5'- uCUGCGCGCUggCCAUGgggcugaACUACCGCCUc -3'
miRNA:   3'- -GACGUGUGGaaGGUGC-------UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 130985 0.66 0.905975
Target:  5'- -cGCGCGCUacgaCACGAC-GCCGCUg -3'
miRNA:   3'- gaCGUGUGGaag-GUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 130801 0.67 0.871191
Target:  5'- -aGCACGCgCagUCGCGACgacccagUGCCGCCg -3'
miRNA:   3'- gaCGUGUG-GaaGGUGCUG-------AUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 130784 0.67 0.856753
Target:  5'- cCUGgGCGCCg-CCgguGCGGCUGCUGCgCu -3'
miRNA:   3'- -GACgUGUGGaaGG---UGCUGAUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 130657 0.68 0.815332
Target:  5'- -cGCACAggugcCCUgcgaCCGCGAgugggcggaCUGCCGCUCg -3'
miRNA:   3'- gaCGUGU-----GGAa---GGUGCU---------GAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 130058 0.68 0.80651
Target:  5'- -aGCGCACCUUUugCAcCGAC-GCCGCUg -3'
miRNA:   3'- gaCGUGUGGAAG--GU-GCUGaUGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.