miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 128801 0.68 0.823985
Target:  5'- gUGCGCACCga--GCGG-UGCCGCaCCa -3'
miRNA:   3'- gACGUGUGGaaggUGCUgAUGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 128719 0.67 0.856753
Target:  5'- -gGCGCGCgUguaCCGCGA--GCCGCUCu -3'
miRNA:   3'- gaCGUGUGgAa--GGUGCUgaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 128500 0.76 0.405952
Target:  5'- gUGCGuCGCgUacguggUCgCGCGGCUGCCGCCCg -3'
miRNA:   3'- gACGU-GUGgA------AG-GUGCUGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 128246 0.67 0.856753
Target:  5'- gCUGCGCACgg-CCcuGCuGGCgcCCGCCCg -3'
miRNA:   3'- -GACGUGUGgaaGG--UG-CUGauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 128165 0.66 0.905975
Target:  5'- -cGgGCugCUgugUCCguGCGcACUGCCGCCg -3'
miRNA:   3'- gaCgUGugGA---AGG--UGC-UGAUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 128079 0.71 0.649768
Target:  5'- gUGCACGCCUUCaaagugUACGGCaACgCGCUCu -3'
miRNA:   3'- gACGUGUGGAAG------GUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 127990 0.66 0.893048
Target:  5'- gCUGCaACGCCga-CACGAC-GCUGCUg -3'
miRNA:   3'- -GACG-UGUGGaagGUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 127206 0.67 0.848853
Target:  5'- -cGCGCugCacgUCUACGcGCgcaaccccGCCGCCCg -3'
miRNA:   3'- gaCGUGugGa--AGGUGC-UGa-------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 127057 0.67 0.882037
Target:  5'- gUGCGCACCgaaggcggguucgucUUCUACGACaACgUGCUCu -3'
miRNA:   3'- gACGUGUGG---------------AAGGUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 126984 0.72 0.588039
Target:  5'- aCUGCACugCUacgUCCagcACGACUA-CGUCCa -3'
miRNA:   3'- -GACGUGugGA---AGG---UGCUGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 126125 0.68 0.80651
Target:  5'- -cGCACGCCgugCgCGCGGCca-UGCCCg -3'
miRNA:   3'- gaCGUGUGGaa-G-GUGCUGaugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 126046 0.69 0.788393
Target:  5'- aUGCGCGCCggugcggaCGCGACccuUGCCGaCCUg -3'
miRNA:   3'- gACGUGUGGaag-----GUGCUG---AUGGC-GGG- -5'
25699 5' -55.5 NC_005337.1 + 124463 0.69 0.788393
Target:  5'- aUGCACucauCCgcCCugGACauggugaacGCCGCCCu -3'
miRNA:   3'- gACGUGu---GGaaGGugCUGa--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 124064 0.67 0.879194
Target:  5'- gUGUACGgcuucuacagcuCCUUCUuCGACaGCCGCCa -3'
miRNA:   3'- gACGUGU------------GGAAGGuGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 124046 0.8 0.251118
Target:  5'- -cGCGCGCCUgCCGCGGCUggaGCUGCCa -3'
miRNA:   3'- gaCGUGUGGAaGGUGCUGA---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 123843 0.7 0.721976
Target:  5'- -cGCGCACCgccgcgcaggcguccUCCugGGCgcaGCCGCaCCu -3'
miRNA:   3'- gaCGUGUGGa--------------AGGugCUGa--UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 123810 0.69 0.769707
Target:  5'- uCUGCGcCGCCcacgugUUCCugGGCggcuCCGUCCc -3'
miRNA:   3'- -GACGU-GUGG------AAGGugCUGau--GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 123697 0.68 0.840754
Target:  5'- -cGgACGCCgugCgGCGGCUggGCaCGCCCg -3'
miRNA:   3'- gaCgUGUGGaa-GgUGCUGA--UG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 122754 0.66 0.893048
Target:  5'- -cGCACGCCgaCCGCgugGAgUACUGgCCg -3'
miRNA:   3'- gaCGUGUGGaaGGUG---CUgAUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 122619 0.75 0.432468
Target:  5'- cCUGCuggaGCGCCUguUCCGCGAgcACCGCCg -3'
miRNA:   3'- -GACG----UGUGGA--AGGUGCUgaUGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.