miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 122403 0.66 0.917952
Target:  5'- gCUGCGCGgCggCgCGCGGCgcCUGUCCg -3'
miRNA:   3'- -GACGUGUgGaaG-GUGCUGauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 122331 0.69 0.779117
Target:  5'- aUGCGCGuCCcUCgACGGC-GCgCGCCCg -3'
miRNA:   3'- gACGUGU-GGaAGgUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 121393 0.72 0.608565
Target:  5'- gUGCACGCCgcUCCACGuCUACUugcgGCUCc -3'
miRNA:   3'- gACGUGUGGa-AGGUGCuGAUGG----CGGG- -5'
25699 5' -55.5 NC_005337.1 + 120446 0.67 0.877038
Target:  5'- aCUGCGCGCCccacaUgguccugaucugcgUCCGgGGC-AUCGCCCa -3'
miRNA:   3'- -GACGUGUGG-----A--------------AGGUgCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 120149 0.71 0.680548
Target:  5'- -cGCGgACUUcgUCCGCGugGCcACCGCCCg -3'
miRNA:   3'- gaCGUgUGGA--AGGUGC--UGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 117246 0.67 0.864448
Target:  5'- gCUGCcguGCGCCUUCgCGCGGC--CCGCa- -3'
miRNA:   3'- -GACG---UGUGGAAG-GUGCUGauGGCGgg -5'
25699 5' -55.5 NC_005337.1 + 116264 0.66 0.912084
Target:  5'- -aGCAgAgCUgCCAUGGCU-CCGCCg -3'
miRNA:   3'- gaCGUgUgGAaGGUGCUGAuGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 115624 0.69 0.769707
Target:  5'- -cGCcCGCCggCgGCGGCgcgGCCGCCa -3'
miRNA:   3'- gaCGuGUGGaaGgUGCUGa--UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 115570 0.68 0.838286
Target:  5'- -cGCGCgACUggCCGCGugUcugagcguguacucGCUGCCCg -3'
miRNA:   3'- gaCGUG-UGGaaGGUGCugA--------------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 115400 0.69 0.788393
Target:  5'- -gGUGC-CCUUCUGCGACgugACC-CCCg -3'
miRNA:   3'- gaCGUGuGGAAGGUGCUGa--UGGcGGG- -5'
25699 5' -55.5 NC_005337.1 + 113864 0.74 0.507749
Target:  5'- gUGcCGCACCgguggUCACGACcACUGCCCu -3'
miRNA:   3'- gAC-GUGUGGaa---GGUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 111520 0.68 0.832462
Target:  5'- -cGCAUACCgagcCCGCG-CU-CCGCCg -3'
miRNA:   3'- gaCGUGUGGaa--GGUGCuGAuGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 111191 0.67 0.864448
Target:  5'- -gGUACACCgucuUCC-CGGaccccgaGCCGCCCa -3'
miRNA:   3'- gaCGUGUGGa---AGGuGCUga-----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 111067 0.67 0.864448
Target:  5'- aUGUACugCUugUCCGCGggcgugagguGCgccagGCCGUCCa -3'
miRNA:   3'- gACGUGugGA--AGGUGC----------UGa----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 110888 0.66 0.912084
Target:  5'- -gGCACAgCagcaCCAgCGACacguugaggUGCCGCCCg -3'
miRNA:   3'- gaCGUGUgGaa--GGU-GCUG---------AUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 110081 0.66 0.898331
Target:  5'- -cGCGCGCCUcgCCGguaacggcgcgaGGCUGCgCGUCCa -3'
miRNA:   3'- gaCGUGUGGAa-GGUg-----------CUGAUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 109206 0.67 0.879194
Target:  5'- -cGCGCAgC-UUgACGAacGCCGCCCg -3'
miRNA:   3'- gaCGUGUgGaAGgUGCUgaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 108919 0.66 0.916797
Target:  5'- -aGgGCACCagcgagacgcgCCGCGACgUGgCGCCCu -3'
miRNA:   3'- gaCgUGUGGaa---------GGUGCUG-AUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 108306 0.69 0.769707
Target:  5'- gCUGCGCuCCUUCCugGACg--CGCg- -3'
miRNA:   3'- -GACGUGuGGAAGGugCUGaugGCGgg -5'
25699 5' -55.5 NC_005337.1 + 105916 0.67 0.864448
Target:  5'- cCUGCACAUCauggUCCACaGAUUuguacACUGCaCCg -3'
miRNA:   3'- -GACGUGUGGa---AGGUG-CUGA-----UGGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.