miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 105760 0.69 0.760172
Target:  5'- -aGUGCGCCUgccCCACGcAgUGCCGCgCg -3'
miRNA:   3'- gaCGUGUGGAa--GGUGC-UgAUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 105245 0.68 0.832462
Target:  5'- -gGCGCcCCcaccaCCACGGCUugggGCCGCCg -3'
miRNA:   3'- gaCGUGuGGaa---GGUGCUGA----UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 105141 0.73 0.567643
Target:  5'- -aGCAUACgaUCCGCGGCaucGCCGCaCCu -3'
miRNA:   3'- gaCGUGUGgaAGGUGCUGa--UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 105073 0.68 0.815332
Target:  5'- gCUGCGCAgcgccuCCUUCggCACGGgcGCCGCCg -3'
miRNA:   3'- -GACGUGU------GGAAG--GUGCUgaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 104883 0.68 0.844017
Target:  5'- -gGCACacggugggggaccccACCagcgCCGCGACgGCCGCCg -3'
miRNA:   3'- gaCGUG---------------UGGaa--GGUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 104845 0.66 0.912084
Target:  5'- uCUGCGagaACUg-CgGCGACaucGCCGCCCg -3'
miRNA:   3'- -GACGUg--UGGaaGgUGCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 104742 0.67 0.879194
Target:  5'- gUGCACGgCcgCCGCG-CgaagACCGCCg -3'
miRNA:   3'- gACGUGUgGaaGGUGCuGa---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 104570 0.67 0.864448
Target:  5'- gUGCGCGCC-UCgCGCGu---CCGUCCg -3'
miRNA:   3'- gACGUGUGGaAG-GUGCugauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 104008 0.67 0.867466
Target:  5'- cCUGCGCGCCguggaccgccugcCCGCGcCUG-CGCCUg -3'
miRNA:   3'- -GACGUGUGGaa-----------GGUGCuGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 103792 0.67 0.848853
Target:  5'- -cGCACACCgucaagCuCAcCGACcucaucACCGCCCu -3'
miRNA:   3'- gaCGUGUGGaa----G-GU-GCUGa-----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 103638 0.71 0.649768
Target:  5'- -cGCGCGCCaUCCuCGGCUGCgCGCaggCCa -3'
miRNA:   3'- gaCGUGUGGaAGGuGCUGAUG-GCG---GG- -5'
25699 5' -55.5 NC_005337.1 + 103514 0.76 0.388852
Target:  5'- gUGCA-GCgCUUCCGCacGCUGCCGCCCg -3'
miRNA:   3'- gACGUgUG-GAAGGUGc-UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 103313 0.67 0.879194
Target:  5'- gUGCGCAUCaacuucggcgCCggGCGGCUcacCCGCCCg -3'
miRNA:   3'- gACGUGUGGaa--------GG--UGCUGAu--GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 103231 0.66 0.893048
Target:  5'- gCUGCA-ACCUgCCGCuGgUGCgCGCCCg -3'
miRNA:   3'- -GACGUgUGGAaGGUGcUgAUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 103092 0.66 0.893048
Target:  5'- -aGCuCACCaagaaggUCUGCGACUAcauCCGCUCg -3'
miRNA:   3'- gaCGuGUGGa------AGGUGCUGAU---GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 101949 0.68 0.823985
Target:  5'- gCUGCGC-CCg--CACGuggcCUGCCGCUCg -3'
miRNA:   3'- -GACGUGuGGaagGUGCu---GAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 101908 0.67 0.864448
Target:  5'- aUGCugaaGCACCggcuggUCCugGAg-ACCGUCCu -3'
miRNA:   3'- gACG----UGUGGa-----AGGugCUgaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 101757 0.68 0.840754
Target:  5'- gCUGCuCACCUUCaagaACGGC-ACCgaGUCCa -3'
miRNA:   3'- -GACGuGUGGAAGg---UGCUGaUGG--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 100862 0.85 0.111288
Target:  5'- -aGCGCACCaUCCACGGCgGCCGCCa -3'
miRNA:   3'- gaCGUGUGGaAGGUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 100299 0.7 0.721976
Target:  5'- gUGCGCACCUUCCugGcccuggccgagaGCUucgggauccuggacuCCGUCCc -3'
miRNA:   3'- gACGUGUGGAAGGugC------------UGAu--------------GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.