miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 100105 0.68 0.832462
Target:  5'- -aGCGCguGCa--CCGCGACgugACCGCCUu -3'
miRNA:   3'- gaCGUG--UGgaaGGUGCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 99832 0.66 0.905975
Target:  5'- gUGCGCAgCgu-CAUGGCcgacaaGCCGCCCg -3'
miRNA:   3'- gACGUGUgGaagGUGCUGa-----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 99657 0.67 0.879194
Target:  5'- -gGCAuCGCCg--CGCGGCUggGCgCGCCCg -3'
miRNA:   3'- gaCGU-GUGGaagGUGCUGA--UG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 99355 0.71 0.660053
Target:  5'- -cGC-CACCUUCaaaaACGGCUgcaucuacgucaACCGCCUg -3'
miRNA:   3'- gaCGuGUGGAAGg---UGCUGA------------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 98950 0.78 0.289728
Target:  5'- -cGCACGCCUgggUCCGCGGC-GCCGUCUu -3'
miRNA:   3'- gaCGUGUGGA---AGGUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 98402 0.66 0.899629
Target:  5'- -cGCACACgUcccgcaguUCCGCGcgu-CCGCCCc -3'
miRNA:   3'- gaCGUGUGgA--------AGGUGCugauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 98146 0.66 0.912084
Target:  5'- -cGCACGCCgcgCACGACagGgUGCCUg -3'
miRNA:   3'- gaCGUGUGGaagGUGCUGa-UgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 97975 0.79 0.276363
Target:  5'- gUGCGCGCCaUCCGCGAC-ACCGUggCCg -3'
miRNA:   3'- gACGUGUGGaAGGUGCUGaUGGCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 97776 0.66 0.905975
Target:  5'- -cGuCGCGCCgagcgCCGCGGCcGCgGCCa -3'
miRNA:   3'- gaC-GUGUGGaa---GGUGCUGaUGgCGGg -5'
25699 5' -55.5 NC_005337.1 + 96907 0.67 0.87193
Target:  5'- cCUGguCuCCUUCUACGACU-CCggcggaaacaGCCCc -3'
miRNA:   3'- -GACguGuGGAAGGUGCUGAuGG----------CGGG- -5'
25699 5' -55.5 NC_005337.1 + 96581 0.69 0.788393
Target:  5'- -aGCuCGgCgUCCugGACgccGCCGCCCu -3'
miRNA:   3'- gaCGuGUgGaAGGugCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 95550 0.67 0.87193
Target:  5'- uUGCcgACGCCggugUCCcccgucaggACGACggGCCGCCg -3'
miRNA:   3'- gACG--UGUGGa---AGG---------UGCUGa-UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 95163 0.7 0.690739
Target:  5'- -cGCACGCUgcCCGCGAgCUuCCGCgCCa -3'
miRNA:   3'- gaCGUGUGGaaGGUGCU-GAuGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 95141 0.66 0.899629
Target:  5'- uCUGCAuCACCaggcugUCCACGucgaUGCgacaGCCCa -3'
miRNA:   3'- -GACGU-GUGGa-----AGGUGCug--AUGg---CGGG- -5'
25699 5' -55.5 NC_005337.1 + 94836 0.69 0.750523
Target:  5'- gUGCGCACCgagCGCGGCccgagcgGgCGCCCg -3'
miRNA:   3'- gACGUGUGGaagGUGCUGa------UgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 94238 0.66 0.899629
Target:  5'- -gGCGCACCg-CgACGACgcCCGCUa -3'
miRNA:   3'- gaCGUGUGGaaGgUGCUGauGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 94151 0.69 0.788393
Target:  5'- -gGCgGCGCCUccCCACGACggagaACCGCUUg -3'
miRNA:   3'- gaCG-UGUGGAa-GGUGCUGa----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 93939 0.72 0.577822
Target:  5'- -cGUGCACCUUCUACGugUucgcguucucGCUGUCCc -3'
miRNA:   3'- gaCGUGUGGAAGGUGCugA----------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 93746 0.69 0.750523
Target:  5'- -cGCGCGCCg-CgGCGGCUgcauGCCGCaCCu -3'
miRNA:   3'- gaCGUGUGGaaGgUGCUGA----UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 93679 0.7 0.710964
Target:  5'- -aGUACAUgUUCCugGACUucuUCGCCa -3'
miRNA:   3'- gaCGUGUGgAAGGugCUGAu--GGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.