miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 23890 0.72 0.587016
Target:  5'- -cGCGCAUCagcaaCCccacgcccgugggACGGCUGCCGCCCu -3'
miRNA:   3'- gaCGUGUGGaa---GG-------------UGCUGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 122619 0.75 0.432468
Target:  5'- cCUGCuggaGCGCCUguUCCGCGAgcACCGCCg -3'
miRNA:   3'- -GACG----UGUGGA--AGGUGCUgaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 6345 0.74 0.498016
Target:  5'- -cGCGCACCgcgUCCGCGuACU--UGCCCa -3'
miRNA:   3'- gaCGUGUGGa--AGGUGC-UGAugGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 28036 0.74 0.507749
Target:  5'- cCUGC-CGCCggCaCGCGACcGCCGCCa -3'
miRNA:   3'- -GACGuGUGGaaG-GUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 71218 0.73 0.527451
Target:  5'- -cGCG-ACCUUCaucaucgaCACGaACUACCGCCCg -3'
miRNA:   3'- gaCGUgUGGAAG--------GUGC-UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 64870 0.73 0.537409
Target:  5'- -gGCACAUg-UCCGCGAUcgcgUGCCGCCUc -3'
miRNA:   3'- gaCGUGUGgaAGGUGCUG----AUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 1646 0.73 0.54743
Target:  5'- -cGCGCGCCcgCgGCGACgagcuugGCCGCCg -3'
miRNA:   3'- gaCGUGUGGaaGgUGCUGa------UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 105141 0.73 0.567643
Target:  5'- -aGCAUACgaUCCGCGGCaucGCCGCaCCu -3'
miRNA:   3'- gaCGUGUGgaAGGUGCUGa--UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 29133 0.72 0.577822
Target:  5'- -aGCAgCACCaugUCgGCGACgGCCGUCCg -3'
miRNA:   3'- gaCGU-GUGGa--AGgUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 69914 0.76 0.414677
Target:  5'- cCUGCGCGCgCUggaCACGGCUguguACCGCCg -3'
miRNA:   3'- -GACGUGUG-GAag-GUGCUGA----UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 64554 0.76 0.414677
Target:  5'- ---gGCACCUUCCugGACcgcgugGCCGCCa -3'
miRNA:   3'- gacgUGUGGAAGGugCUGa-----UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 22712 0.76 0.405952
Target:  5'- aUGuCGCACCUcgUCUACGGC-ACCGCCg -3'
miRNA:   3'- gAC-GUGUGGA--AGGUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 124046 0.8 0.251118
Target:  5'- -cGCGCGCCUgCCGCGGCUggaGCUGCCa -3'
miRNA:   3'- gaCGUGUGGAaGGUGCUGA---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 97975 0.79 0.276363
Target:  5'- gUGCGCGCCaUCCGCGAC-ACCGUggCCg -3'
miRNA:   3'- gACGUGUGGaAGGUGCUGaUGGCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 98950 0.78 0.289728
Target:  5'- -cGCACGCCUgggUCCGCGGC-GCCGUCUu -3'
miRNA:   3'- gaCGUGUGGA---AGGUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 7234 0.78 0.289728
Target:  5'- gUGCGCACC-UCCGCGcCcGCCGCCa -3'
miRNA:   3'- gACGUGUGGaAGGUGCuGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 131096 0.78 0.302889
Target:  5'- uCUGCGCGCUggCCAUGgggcugaACUACCGCCUc -3'
miRNA:   3'- -GACGUGUGGaaGGUGC-------UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 78102 0.76 0.377994
Target:  5'- -cGCGCGCUgaggUCCAgGACUacggcgucggccuuGCCGCCCc -3'
miRNA:   3'- gaCGUGUGGa---AGGUgCUGA--------------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 103514 0.76 0.388852
Target:  5'- gUGCA-GCgCUUCCGCacGCUGCCGCCCg -3'
miRNA:   3'- gACGUgUG-GAAGGUGc-UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 128500 0.76 0.405952
Target:  5'- gUGCGuCGCgUacguggUCgCGCGGCUGCCGCCCg -3'
miRNA:   3'- gACGU-GUGgA------AG-GUGCUGAUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.