miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 29133 0.72 0.577822
Target:  5'- -aGCAgCACCaugUCgGCGACgGCCGUCCg -3'
miRNA:   3'- gaCGU-GUGGa--AGgUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 23890 0.72 0.587016
Target:  5'- -cGCGCAUCagcaaCCccacgcccgugggACGGCUGCCGCCCu -3'
miRNA:   3'- gaCGUGUGGaa---GG-------------UGCUGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 52236 0.71 0.660053
Target:  5'- -cGCucgACGCCauUUCCGCGACgcugUCGCCCa -3'
miRNA:   3'- gaCG---UGUGG--AAGGUGCUGau--GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 51751 0.71 0.680548
Target:  5'- gCUGCcCGCCcuggCgCugGACgGCCGCCCc -3'
miRNA:   3'- -GACGuGUGGaa--G-GugCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 76391 0.7 0.690739
Target:  5'- uUGUACACCgugCgCGCGgggcGCUGgCGCCCg -3'
miRNA:   3'- gACGUGUGGaa-G-GUGC----UGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 88132 0.7 0.700881
Target:  5'- -aGCACGCgCUcgaucUCCugG--UGCCGCCCg -3'
miRNA:   3'- gaCGUGUG-GA-----AGGugCugAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 3314 0.7 0.700881
Target:  5'- uUGCGCACg-UCCACGGCca-CGCCg -3'
miRNA:   3'- gACGUGUGgaAGGUGCUGaugGCGGg -5'
25699 5' -55.5 NC_005337.1 + 27587 0.7 0.709959
Target:  5'- gUGCACGCUcgCCACGAggcacagcuccucCUcccGCCGCUCg -3'
miRNA:   3'- gACGUGUGGaaGGUGCU-------------GA---UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 68422 0.7 0.710964
Target:  5'- -cGCGCGCCgcCgACGACgaguCCGCUCu -3'
miRNA:   3'- gaCGUGUGGaaGgUGCUGau--GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 57139 0.7 0.720979
Target:  5'- -cGCGCugC-UCgGCGGCgGCaCGCCCg -3'
miRNA:   3'- gaCGUGugGaAGgUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 103638 0.71 0.649768
Target:  5'- -cGCGCGCCaUCCuCGGCUGCgCGCaggCCa -3'
miRNA:   3'- gaCGUGUGGaAGGuGCUGAUG-GCG---GG- -5'
25699 5' -55.5 NC_005337.1 + 9961 0.71 0.649768
Target:  5'- aUGaGCGCCUgcgCCGCGACgagGCCGCguCCu -3'
miRNA:   3'- gACgUGUGGAa--GGUGCUGa--UGGCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 47550 0.72 0.59829
Target:  5'- -cGUGgGCCUgaugCCGCGACUgaccACCGCCg -3'
miRNA:   3'- gaCGUgUGGAa---GGUGCUGA----UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 86302 0.72 0.59829
Target:  5'- -aGCGCGCCccgUCCACGAagaaGCCGUCg -3'
miRNA:   3'- gaCGUGUGGa--AGGUGCUga--UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 65210 0.72 0.608565
Target:  5'- gUGCACccGCCgcuggCCACGcugGCcACCGCCCu -3'
miRNA:   3'- gACGUG--UGGaa---GGUGC---UGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 121393 0.72 0.608565
Target:  5'- gUGCACGCCgcUCCACGuCUACUugcgGCUCc -3'
miRNA:   3'- gACGUGUGGa-AGGUGCuGAUGG----CGGG- -5'
25699 5' -55.5 NC_005337.1 + 23064 0.72 0.618858
Target:  5'- -cGCGCGCCggaaCGCGGCgGCCguGCCCg -3'
miRNA:   3'- gaCGUGUGGaag-GUGCUGaUGG--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 41745 0.72 0.618858
Target:  5'- -cGCGCACCgcgUCCAUggGGCgGCCGCgCa -3'
miRNA:   3'- gaCGUGUGGa--AGGUG--CUGaUGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 89124 0.72 0.629162
Target:  5'- uCUGCcgacugGCGCCgggCGCGACUaGCUGCCCg -3'
miRNA:   3'- -GACG------UGUGGaagGUGCUGA-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 61895 0.72 0.629162
Target:  5'- -gGCuCGCUgaCCGCGACgGCCGUCCg -3'
miRNA:   3'- gaCGuGUGGaaGGUGCUGaUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.