Results 81 - 100 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25699 | 5' | -55.5 | NC_005337.1 | + | 65122 | 0.7 | 0.730917 |
Target: 5'- gCUGCuggucGCACUggCCGCGAaggcgGCCGCCg -3' miRNA: 3'- -GACG-----UGUGGaaGGUGCUga---UGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 79166 | 0.7 | 0.740768 |
Target: 5'- -aGgGCACC-UCCACGAUcucgGCCGUCUc -3' miRNA: 3'- gaCgUGUGGaAGGUGCUGa---UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 16040 | 0.69 | 0.750523 |
Target: 5'- gCUGCgGCGCCUgccgCCGCGcggGCCGCUg -3' miRNA: 3'- -GACG-UGUGGAa---GGUGCugaUGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 67342 | 0.69 | 0.750523 |
Target: 5'- --aCACGCCcUCCACGAUgGCgcaGCCCa -3' miRNA: 3'- gacGUGUGGaAGGUGCUGaUGg--CGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 94836 | 0.69 | 0.750523 |
Target: 5'- gUGCGCACCgagCGCGGCccgagcgGgCGCCCg -3' miRNA: 3'- gACGUGUGGaagGUGCUGa------UgGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 58414 | 0.69 | 0.750523 |
Target: 5'- aUGUACGCCa-UCGCGGCggcGCCGCUCc -3' miRNA: 3'- gACGUGUGGaaGGUGCUGa--UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 72935 | 0.69 | 0.750523 |
Target: 5'- -cGCACACCaUCgACGGC--CgGCCCa -3' miRNA: 3'- gaCGUGUGGaAGgUGCUGauGgCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 57139 | 0.7 | 0.720979 |
Target: 5'- -cGCGCugC-UCgGCGGCgGCaCGCCCg -3' miRNA: 3'- gaCGUGugGaAGgUGCUGaUG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 68422 | 0.7 | 0.710964 |
Target: 5'- -cGCGCGCCgcCgACGACgaguCCGCUCu -3' miRNA: 3'- gaCGUGUGGaaGgUGCUGau--GGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 27587 | 0.7 | 0.709959 |
Target: 5'- gUGCACGCUcgCCACGAggcacagcuccucCUcccGCCGCUCg -3' miRNA: 3'- gACGUGUGGaaGGUGCU-------------GA---UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 89124 | 0.72 | 0.629162 |
Target: 5'- uCUGCcgacugGCGCCgggCGCGACUaGCUGCCCg -3' miRNA: 3'- -GACG------UGUGGaagGUGCUGA-UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 61895 | 0.72 | 0.629162 |
Target: 5'- -gGCuCGCUgaCCGCGACgGCCGUCCg -3' miRNA: 3'- gaCGuGUGGaaGGUGCUGaUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 9961 | 0.71 | 0.649768 |
Target: 5'- aUGaGCGCCUgcgCCGCGACgagGCCGCguCCu -3' miRNA: 3'- gACgUGUGGAa--GGUGCUGa--UGGCG--GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 103638 | 0.71 | 0.649768 |
Target: 5'- -cGCGCGCCaUCCuCGGCUGCgCGCaggCCa -3' miRNA: 3'- gaCGUGUGGaAGGuGCUGAUG-GCG---GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 52236 | 0.71 | 0.660053 |
Target: 5'- -cGCucgACGCCauUUCCGCGACgcugUCGCCCa -3' miRNA: 3'- gaCG---UGUGG--AAGGUGCUGau--GGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 51751 | 0.71 | 0.680548 |
Target: 5'- gCUGCcCGCCcuggCgCugGACgGCCGCCCc -3' miRNA: 3'- -GACGuGUGGaa--G-GugCUGaUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 76391 | 0.7 | 0.690739 |
Target: 5'- uUGUACACCgugCgCGCGgggcGCUGgCGCCCg -3' miRNA: 3'- gACGUGUGGaa-G-GUGC----UGAUgGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 88132 | 0.7 | 0.700881 |
Target: 5'- -aGCACGCgCUcgaucUCCugG--UGCCGCCCg -3' miRNA: 3'- gaCGUGUG-GA-----AGGugCugAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 3314 | 0.7 | 0.700881 |
Target: 5'- uUGCGCACg-UCCACGGCca-CGCCg -3' miRNA: 3'- gACGUGUGgaAGGUGCUGaugGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 54151 | 0.69 | 0.769707 |
Target: 5'- gUGuCGCGCCcggugUCCACGACcGCCugGCUCg -3' miRNA: 3'- gAC-GUGUGGa----AGGUGCUGaUGG--CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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