miRNA display CGI


Results 101 - 120 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 122331 0.69 0.779117
Target:  5'- aUGCGCGuCCcUCgACGGC-GCgCGCCCg -3'
miRNA:   3'- gACGUGU-GGaAGgUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 62346 0.69 0.788393
Target:  5'- -cGCGCACCUcggggUCCACG-CUGUCGUCg -3'
miRNA:   3'- gaCGUGUGGA-----AGGUGCuGAUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 96581 0.69 0.788393
Target:  5'- -aGCuCGgCgUCCugGACgccGCCGCCCu -3'
miRNA:   3'- gaCGuGUgGaAGGugCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 115400 0.69 0.788393
Target:  5'- -gGUGC-CCUUCUGCGACgugACC-CCCg -3'
miRNA:   3'- gaCGUGuGGAAGGUGCUGa--UGGcGGG- -5'
25699 5' -55.5 NC_005337.1 + 76118 0.69 0.788393
Target:  5'- -cGCACGCgCUUgCGCG-CgaagGCCGCCg -3'
miRNA:   3'- gaCGUGUG-GAAgGUGCuGa---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 67342 0.69 0.750523
Target:  5'- --aCACGCCcUCCACGAUgGCgcaGCCCa -3'
miRNA:   3'- gacGUGUGGaAGGUGCUGaUGg--CGGG- -5'
25699 5' -55.5 NC_005337.1 + 16040 0.69 0.750523
Target:  5'- gCUGCgGCGCCUgccgCCGCGcggGCCGCUg -3'
miRNA:   3'- -GACG-UGUGGAa---GGUGCugaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 52236 0.71 0.660053
Target:  5'- -cGCucgACGCCauUUCCGCGACgcugUCGCCCa -3'
miRNA:   3'- gaCG---UGUGG--AAGGUGCUGau--GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 51751 0.71 0.680548
Target:  5'- gCUGCcCGCCcuggCgCugGACgGCCGCCCc -3'
miRNA:   3'- -GACGuGUGGaa--G-GugCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 76391 0.7 0.690739
Target:  5'- uUGUACACCgugCgCGCGgggcGCUGgCGCCCg -3'
miRNA:   3'- gACGUGUGGaa-G-GUGC----UGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 88132 0.7 0.700881
Target:  5'- -aGCACGCgCUcgaucUCCugG--UGCCGCCCg -3'
miRNA:   3'- gaCGUGUG-GA-----AGGugCugAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 3314 0.7 0.700881
Target:  5'- uUGCGCACg-UCCACGGCca-CGCCg -3'
miRNA:   3'- gACGUGUGgaAGGUGCUGaugGCGGg -5'
25699 5' -55.5 NC_005337.1 + 27587 0.7 0.709959
Target:  5'- gUGCACGCUcgCCACGAggcacagcuccucCUcccGCCGCUCg -3'
miRNA:   3'- gACGUGUGGaaGGUGCU-------------GA---UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 68422 0.7 0.710964
Target:  5'- -cGCGCGCCgcCgACGACgaguCCGCUCu -3'
miRNA:   3'- gaCGUGUGGaaGgUGCUGau--GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 57139 0.7 0.720979
Target:  5'- -cGCGCugC-UCgGCGGCgGCaCGCCCg -3'
miRNA:   3'- gaCGUGugGaAGgUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 100299 0.7 0.721976
Target:  5'- gUGCGCACCUUCCugGcccuggccgagaGCUucgggauccuggacuCCGUCCc -3'
miRNA:   3'- gACGUGUGGAAGGugC------------UGAu--------------GGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 21677 0.7 0.730917
Target:  5'- gCUGCACuACCUggUCACGACguuuCCGCacgCCg -3'
miRNA:   3'- -GACGUG-UGGAa-GGUGCUGau--GGCG---GG- -5'
25699 5' -55.5 NC_005337.1 + 52814 0.7 0.730917
Target:  5'- -gGCGgACCUgcUgCGCGACUACgCGCuCCa -3'
miRNA:   3'- gaCGUgUGGA--AgGUGCUGAUG-GCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 65122 0.7 0.730917
Target:  5'- gCUGCuggucGCACUggCCGCGAaggcgGCCGCCg -3'
miRNA:   3'- -GACG-----UGUGGaaGGUGCUga---UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 79166 0.7 0.740768
Target:  5'- -aGgGCACC-UCCACGAUcucgGCCGUCUc -3'
miRNA:   3'- gaCgUGUGGaAGGUGCUGa---UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.