miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 24555 1.11 0.002206
Target:  5'- gCUGCACACCUUCCACGACUACCGCCCc -3'
miRNA:   3'- -GACGUGUGGAAGGUGCUGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 58254 0.71 0.649768
Target:  5'- -gGCGCGgcggUCUUCCGCGugUACCGgCg -3'
miRNA:   3'- gaCGUGU----GGAAGGUGCugAUGGCgGg -5'
25699 5' -55.5 NC_005337.1 + 6682 0.71 0.660053
Target:  5'- -aGCACgACUcggcgacgUCCACGGCUG-CGCCCg -3'
miRNA:   3'- gaCGUG-UGGa-------AGGUGCUGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 45947 0.65 0.921357
Target:  5'- -cGCGCGCCggcgcgcguggcgUCCACG-CUGaCGUCCc -3'
miRNA:   3'- gaCGUGUGGa------------AGGUGCuGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 91482 0.77 0.348223
Target:  5'- -cGUGCGCCg-CCACGaaggucacGCUGCCGCCCg -3'
miRNA:   3'- gaCGUGUGGaaGGUGC--------UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 69120 0.76 0.380482
Target:  5'- uCUGCGggcgaGCCgcggUCCACGGCgGCCGCCUu -3'
miRNA:   3'- -GACGUg----UGGa---AGGUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 24711 0.73 0.527451
Target:  5'- -cGUGCACCccgcggagUUCCGCGGgUACgCGCCCu -3'
miRNA:   3'- gaCGUGUGG--------AAGGUGCUgAUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 72884 0.73 0.537409
Target:  5'- gUGCACGCC-UCCGCGACggagcucuuCCaGUCCg -3'
miRNA:   3'- gACGUGUGGaAGGUGCUGau-------GG-CGGG- -5'
25699 5' -55.5 NC_005337.1 + 133012 0.73 0.557511
Target:  5'- -cGCGgGCCaUCCuGCGGCUgAUCGCCCg -3'
miRNA:   3'- gaCGUgUGGaAGG-UGCUGA-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 36755 0.72 0.608565
Target:  5'- uCUGCGgGCCcUCCA-GGCUGCgCGCCa -3'
miRNA:   3'- -GACGUgUGGaAGGUgCUGAUG-GCGGg -5'
25699 5' -55.5 NC_005337.1 + 126984 0.72 0.588039
Target:  5'- aCUGCACugCUacgUCCagcACGACUA-CGUCCa -3'
miRNA:   3'- -GACGUGugGA---AGG---UGCUGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 14759 0.73 0.54743
Target:  5'- -aGCugGCCUUgCACGAgUGCUGCUUc -3'
miRNA:   3'- gaCGugUGGAAgGUGCUgAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 43959 0.8 0.222271
Target:  5'- -cGCGCACCaUCUACGGCgGCgCGCCCg -3'
miRNA:   3'- gaCGUGUGGaAGGUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 30407 0.72 0.59829
Target:  5'- -gGC-CGCCgcgcUCCGCGaACUGCCGCUUg -3'
miRNA:   3'- gaCGuGUGGa---AGGUGC-UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 10434 0.8 0.233456
Target:  5'- aUGCACGCCgcgaacgCCGgGACggaGCCGCCCa -3'
miRNA:   3'- gACGUGUGGaa-----GGUgCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133083 0.73 0.537409
Target:  5'- aUGCGCGCCcgugCCGCG-CUcgcgcACCGCCUa -3'
miRNA:   3'- gACGUGUGGaa--GGUGCuGA-----UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 18779 0.72 0.608565
Target:  5'- -gGCGCACCUgacgUCCACGGCc-CCGUgCg -3'
miRNA:   3'- gaCGUGUGGA----AGGUGCUGauGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 128079 0.71 0.649768
Target:  5'- gUGCACGCCUUCaaagugUACGGCaACgCGCUCu -3'
miRNA:   3'- gACGUGUGGAAG------GUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 77834 0.79 0.282983
Target:  5'- -gGC-CACCgcgcgUCCACGcGCUGCUGCCCg -3'
miRNA:   3'- gaCGuGUGGa----AGGUGC-UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 113864 0.74 0.507749
Target:  5'- gUGcCGCACCgguggUCACGACcACUGCCCu -3'
miRNA:   3'- gAC-GUGUGGaa---GGUGCUGaUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.