Results 21 - 40 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25699 | 5' | -55.5 | NC_005337.1 | + | 120149 | 0.71 | 0.680548 |
Target: 5'- -cGCGgACUUcgUCCGCGugGCcACCGCCCg -3' miRNA: 3'- gaCGUgUGGA--AGGUGC--UGaUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 6682 | 0.71 | 0.660053 |
Target: 5'- -aGCACgACUcggcgacgUCCACGGCUG-CGCCCg -3' miRNA: 3'- gaCGUG-UGGa-------AGGUGCUGAUgGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 14759 | 0.73 | 0.54743 |
Target: 5'- -aGCugGCCUUgCACGAgUGCUGCUUc -3' miRNA: 3'- gaCGugUGGAAgGUGCUgAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 77834 | 0.79 | 0.282983 |
Target: 5'- -gGC-CACCgcgcgUCCACGcGCUGCUGCCCg -3' miRNA: 3'- gaCGuGUGGa----AGGUGC-UGAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 79523 | 0.69 | 0.750523 |
Target: 5'- -aGCACGCCUucuUCUugGACaucaUGCgGUCCu -3' miRNA: 3'- gaCGUGUGGA---AGGugCUG----AUGgCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 18632 | 0.7 | 0.710964 |
Target: 5'- -cGCACACUccUCgGCGAUggcgGCCGCgCCg -3' miRNA: 3'- gaCGUGUGGa-AGgUGCUGa---UGGCG-GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 58254 | 0.71 | 0.649768 |
Target: 5'- -gGCGCGgcggUCUUCCGCGugUACCGgCg -3' miRNA: 3'- gaCGUGU----GGAAGGUGCugAUGGCgGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 10434 | 0.8 | 0.233456 |
Target: 5'- aUGCACGCCgcgaacgCCGgGACggaGCCGCCCa -3' miRNA: 3'- gACGUGUGGaa-----GGUgCUGa--UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 93679 | 0.7 | 0.710964 |
Target: 5'- -aGUACAUgUUCCugGACUucuUCGCCa -3' miRNA: 3'- gaCGUGUGgAAGGugCUGAu--GGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 43959 | 0.8 | 0.222271 |
Target: 5'- -cGCGCACCaUCUACGGCgGCgCGCCCg -3' miRNA: 3'- gaCGUGUGGaAGGUGCUGaUG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 128079 | 0.71 | 0.649768 |
Target: 5'- gUGCACGCCUUCaaagugUACGGCaACgCGCUCu -3' miRNA: 3'- gACGUGUGGAAG------GUGCUGaUG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 23621 | 0.7 | 0.690739 |
Target: 5'- -aGCGCAUCUgCUACGACU-UCGCCg -3' miRNA: 3'- gaCGUGUGGAaGGUGCUGAuGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 30407 | 0.72 | 0.59829 |
Target: 5'- -gGC-CGCCgcgcUCCGCGaACUGCCGCUUg -3' miRNA: 3'- gaCGuGUGGa---AGGUGC-UGAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 133012 | 0.73 | 0.557511 |
Target: 5'- -cGCGgGCCaUCCuGCGGCUgAUCGCCCg -3' miRNA: 3'- gaCGUgUGGaAGG-UGCUGA-UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 24711 | 0.73 | 0.527451 |
Target: 5'- -cGUGCACCccgcggagUUCCGCGGgUACgCGCCCu -3' miRNA: 3'- gaCGUGUGG--------AAGGUGCUgAUG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 91482 | 0.77 | 0.348223 |
Target: 5'- -cGUGCGCCg-CCACGaaggucacGCUGCCGCCCg -3' miRNA: 3'- gaCGUGUGGaaGGUGC--------UGAUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 56822 | 0.69 | 0.759212 |
Target: 5'- -cGCACGCCa-CCACGAgaACCuccacauGCCCu -3' miRNA: 3'- gaCGUGUGGaaGGUGCUgaUGG-------CGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 1982 | 0.69 | 0.750523 |
Target: 5'- gUGCACGCCgggUCgGCGucaGCUGCgGCUUg -3' miRNA: 3'- gACGUGUGGa--AGgUGC---UGAUGgCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 34830 | 0.7 | 0.730917 |
Target: 5'- -cGCGCguccacgaggugGCCcacgCCGCGGCUcagcacgcacccGCCGCCCg -3' miRNA: 3'- gaCGUG------------UGGaa--GGUGCUGA------------UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 123843 | 0.7 | 0.721976 |
Target: 5'- -cGCGCACCgccgcgcaggcguccUCCugGGCgcaGCCGCaCCu -3' miRNA: 3'- gaCGUGUGGa--------------AGGugCUGa--UGGCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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