miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 48244 0.69 0.747607
Target:  5'- gCUGCACcgccgccauggaccGCC-UCCGCuGCUGCuaCGCCCg -3'
miRNA:   3'- -GACGUG--------------UGGaAGGUGcUGAUG--GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 58254 0.71 0.649768
Target:  5'- -gGCGCGgcggUCUUCCGCGugUACCGgCg -3'
miRNA:   3'- gaCGUGU----GGAAGGUGCugAUGGCgGg -5'
25699 5' -55.5 NC_005337.1 + 10434 0.8 0.233456
Target:  5'- aUGCACGCCgcgaacgCCGgGACggaGCCGCCCa -3'
miRNA:   3'- gACGUGUGGaa-----GGUgCUGa--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 50240 0.7 0.740768
Target:  5'- gUGCGCGCC-UCCGCcgGugUGucCCGCCg -3'
miRNA:   3'- gACGUGUGGaAGGUG--CugAU--GGCGGg -5'
25699 5' -55.5 NC_005337.1 + 43959 0.8 0.222271
Target:  5'- -cGCGCACCaUCUACGGCgGCgCGCCCg -3'
miRNA:   3'- gaCGUGUGGaAGGUGCUGaUG-GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 24651 0.69 0.797527
Target:  5'- -cGCGCucgcgGCCUUCCugGAC-ACCgagGCCUu -3'
miRNA:   3'- gaCGUG-----UGGAAGGugCUGaUGG---CGGG- -5'
25699 5' -55.5 NC_005337.1 + 91482 0.77 0.348223
Target:  5'- -cGUGCGCCg-CCACGaaggucacGCUGCCGCCCg -3'
miRNA:   3'- gaCGUGUGGaaGGUGC--------UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 24257 0.69 0.797527
Target:  5'- -aGCACgaguucGCCUUCCACGuCaGCUGgCCg -3'
miRNA:   3'- gaCGUG------UGGAAGGUGCuGaUGGCgGG- -5'
25699 5' -55.5 NC_005337.1 + 35106 0.69 0.788393
Target:  5'- -cGCGCAUCgUCCgcGCGGCgcggaCGCCCa -3'
miRNA:   3'- gaCGUGUGGaAGG--UGCUGaug--GCGGG- -5'
25699 5' -55.5 NC_005337.1 + 131340 0.69 0.773486
Target:  5'- aUGCGCGCCgugcgcgucggcacUCCgGCGAC-GCCGCUCc -3'
miRNA:   3'- gACGUGUGGa-------------AGG-UGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 54678 0.69 0.769707
Target:  5'- -aGCGCACCUUCagCACG-CUGaaGCUCg -3'
miRNA:   3'- gaCGUGUGGAAG--GUGCuGAUggCGGG- -5'
25699 5' -55.5 NC_005337.1 + 56822 0.69 0.759212
Target:  5'- -cGCACGCCa-CCACGAgaACCuccacauGCCCu -3'
miRNA:   3'- gaCGUGUGGaaGGUGCUgaUGG-------CGGG- -5'
25699 5' -55.5 NC_005337.1 + 1982 0.69 0.750523
Target:  5'- gUGCACGCCgggUCgGCGucaGCUGCgGCUUg -3'
miRNA:   3'- gACGUGUGGa--AGgUGC---UGAUGgCGGG- -5'
25699 5' -55.5 NC_005337.1 + 30922 0.7 0.724964
Target:  5'- -aGCACGCCgUUCUcgacaccagcagcggGCGGgUgaGCCGCCCg -3'
miRNA:   3'- gaCGUGUGG-AAGG---------------UGCUgA--UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 93679 0.7 0.710964
Target:  5'- -aGUACAUgUUCCugGACUucuUCGCCa -3'
miRNA:   3'- gaCGUGUGgAAGGugCUGAu--GGCGGg -5'
25699 5' -55.5 NC_005337.1 + 120149 0.71 0.680548
Target:  5'- -cGCGgACUUcgUCCGCGugGCcACCGCCCg -3'
miRNA:   3'- gaCGUgUGGA--AGGUGC--UGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 6682 0.71 0.660053
Target:  5'- -aGCACgACUcggcgacgUCCACGGCUG-CGCCCg -3'
miRNA:   3'- gaCGUG-UGGa-------AGGUGCUGAUgGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 30407 0.72 0.59829
Target:  5'- -gGC-CGCCgcgcUCCGCGaACUGCCGCUUg -3'
miRNA:   3'- gaCGuGUGGa---AGGUGC-UGAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 133012 0.73 0.557511
Target:  5'- -cGCGgGCCaUCCuGCGGCUgAUCGCCCg -3'
miRNA:   3'- gaCGUgUGGaAGG-UGCUGA-UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 24711 0.73 0.527451
Target:  5'- -cGUGCACCccgcggagUUCCGCGGgUACgCGCCCu -3'
miRNA:   3'- gaCGUGUGG--------AAGGUGCUgAUG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.