Results 61 - 80 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25699 | 5' | -55.5 | NC_005337.1 | + | 1982 | 0.69 | 0.750523 |
Target: 5'- gUGCACGCCgggUCgGCGucaGCUGCgGCUUg -3' miRNA: 3'- gACGUGUGGa--AGgUGC---UGAUGgCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 57527 | 0.69 | 0.760172 |
Target: 5'- -cGCGCGUCUUCCugGGCcuggACCGCa- -3' miRNA: 3'- gaCGUGUGGAAGGugCUGa---UGGCGgg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 69120 | 0.76 | 0.380482 |
Target: 5'- uCUGCGggcgaGCCgcggUCCACGGCgGCCGCCUu -3' miRNA: 3'- -GACGUg----UGGa---AGGUGCUGaUGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 72884 | 0.73 | 0.537409 |
Target: 5'- gUGCACGCC-UCCGCGACggagcucuuCCaGUCCg -3' miRNA: 3'- gACGUGUGGaAGGUGCUGau-------GG-CGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 93939 | 0.72 | 0.577822 |
Target: 5'- -cGUGCACCUUCUACGugUucgcguucucGCUGUCCc -3' miRNA: 3'- gaCGUGUGGAAGGUGCugA----------UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 18779 | 0.72 | 0.608565 |
Target: 5'- -gGCGCACCUgacgUCCACGGCc-CCGUgCg -3' miRNA: 3'- gaCGUGUGGA----AGGUGCUGauGGCGgG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 99355 | 0.71 | 0.660053 |
Target: 5'- -cGC-CACCUUCaaaaACGGCUgcaucuacgucaACCGCCUg -3' miRNA: 3'- gaCGuGUGGAAGg---UGCUGA------------UGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 23621 | 0.7 | 0.690739 |
Target: 5'- -aGCGCAUCUgCUACGACU-UCGCCg -3' miRNA: 3'- gaCGUGUGGAaGGUGCUGAuGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 18632 | 0.7 | 0.710964 |
Target: 5'- -cGCACACUccUCgGCGAUggcgGCCGCgCCg -3' miRNA: 3'- gaCGUGUGGa-AGgUGCUGa---UGGCG-GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 92683 | 0.7 | 0.730917 |
Target: 5'- gUGCuCACCUUCCugGGCgGCgGCgaCCu -3' miRNA: 3'- gACGuGUGGAAGGugCUGaUGgCG--GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 68683 | 0.68 | 0.832462 |
Target: 5'- -aGCGCGC--UCUugGcCUGCgCGCCCg -3' miRNA: 3'- gaCGUGUGgaAGGugCuGAUG-GCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 128801 | 0.68 | 0.823985 |
Target: 5'- gUGCGCACCga--GCGG-UGCCGCaCCa -3' miRNA: 3'- gACGUGUGGaaggUGCUgAUGGCG-GG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 57091 | 0.69 | 0.769707 |
Target: 5'- gCUGUuCGCCaUCCGCGGgUGgCGCCg -3' miRNA: 3'- -GACGuGUGGaAGGUGCUgAUgGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 45310 | 0.69 | 0.779117 |
Target: 5'- -cGCACACCgggaCCGCGccCU-CCGCCUc -3' miRNA: 3'- gaCGUGUGGaa--GGUGCu-GAuGGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 24257 | 0.69 | 0.797527 |
Target: 5'- -aGCACgaguucGCCUUCCACGuCaGCUGgCCg -3' miRNA: 3'- gaCGUG------UGGAAGGUGCuGaUGGCgGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 24651 | 0.69 | 0.797527 |
Target: 5'- -cGCGCucgcgGCCUUCCugGAC-ACCgagGCCUu -3' miRNA: 3'- gaCGUG-----UGGAAGGugCUGaUGG---CGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 53950 | 0.68 | 0.80651 |
Target: 5'- uCUGCucGCGCCUgugCCGCGACUcguUCGCg- -3' miRNA: 3'- -GACG--UGUGGAa--GGUGCUGAu--GGCGgg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 25055 | 0.68 | 0.815332 |
Target: 5'- gCUGCGCGCCgugcgggcggcgUUCgucaagcugCGCGACgccgagcuCCGCCCg -3' miRNA: 3'- -GACGUGUGG------------AAG---------GUGCUGau------GGCGGG- -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 72241 | 0.68 | 0.818814 |
Target: 5'- -gGCGCGCCUUcguagacgccauggcCCACGACgagcggcgGCUGCUg -3' miRNA: 3'- gaCGUGUGGAA---------------GGUGCUGa-------UGGCGGg -5' |
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25699 | 5' | -55.5 | NC_005337.1 | + | 101949 | 0.68 | 0.823985 |
Target: 5'- gCUGCGC-CCg--CACGuggcCUGCCGCUCg -3' miRNA: 3'- -GACGUGuGGaagGUGCu---GAUGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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