miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 5' -55.5 NC_005337.1 + 89112 0.69 0.779117
Target:  5'- -gGUACGCCUUgaCCACGACgcaguuCCGCa- -3'
miRNA:   3'- gaCGUGUGGAA--GGUGCUGau----GGCGgg -5'
25699 5' -55.5 NC_005337.1 + 79016 0.69 0.788393
Target:  5'- -cGCGCACCgagaGCGACgaauCCgGCCCg -3'
miRNA:   3'- gaCGUGUGGaaggUGCUGau--GG-CGGG- -5'
25699 5' -55.5 NC_005337.1 + 36803 0.69 0.797527
Target:  5'- -aGUACGCCUcgaagaaggcgUCCACGACgcggACCaCCUu -3'
miRNA:   3'- gaCGUGUGGA-----------AGGUGCUGa---UGGcGGG- -5'
25699 5' -55.5 NC_005337.1 + 133403 0.69 0.797527
Target:  5'- -gGCGCGCuCUUCCGCccGGCcgcgcccgcGCUGCCCg -3'
miRNA:   3'- gaCGUGUG-GAAGGUG--CUGa--------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 130058 0.68 0.80651
Target:  5'- -aGCGCACCUUUugCAcCGAC-GCCGCUg -3'
miRNA:   3'- gaCGUGUGGAAG--GU-GCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 72241 0.68 0.818814
Target:  5'- -gGCGCGCCUUcguagacgccauggcCCACGACgagcggcgGCUGCUg -3'
miRNA:   3'- gaCGUGUGGAA---------------GGUGCUGa-------UGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 101949 0.68 0.823985
Target:  5'- gCUGCGC-CCg--CACGuggcCUGCCGCUCg -3'
miRNA:   3'- -GACGUGuGGaagGUGCu---GAUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 92683 0.7 0.730917
Target:  5'- gUGCuCACCUUCCugGGCgGCgGCgaCCu -3'
miRNA:   3'- gACGuGUGGAAGGugCUGaUGgCG--GG- -5'
25699 5' -55.5 NC_005337.1 + 18632 0.7 0.710964
Target:  5'- -cGCACACUccUCgGCGAUggcgGCCGCgCCg -3'
miRNA:   3'- gaCGUGUGGa-AGgUGCUGa---UGGCG-GG- -5'
25699 5' -55.5 NC_005337.1 + 23621 0.7 0.690739
Target:  5'- -aGCGCAUCUgCUACGACU-UCGCCg -3'
miRNA:   3'- gaCGUGUGGAaGGUGCUGAuGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 115570 0.68 0.838286
Target:  5'- -cGCGCgACUggCCGCGugUcugagcguguacucGCUGCCCg -3'
miRNA:   3'- gaCGUG-UGGaaGGUGCugA--------------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 57288 0.68 0.840754
Target:  5'- -gGCGCGCgCggCUGCGGC-GCCGCUCu -3'
miRNA:   3'- gaCGUGUG-GaaGGUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 104883 0.68 0.844017
Target:  5'- -gGCACacggugggggaccccACCagcgCCGCGACgGCCGCCg -3'
miRNA:   3'- gaCGUG---------------UGGaa--GGUGCUGaUGGCGGg -5'
25699 5' -55.5 NC_005337.1 + 127206 0.67 0.848853
Target:  5'- -cGCGCugCacgUCUACGcGCgcaaccccGCCGCCCg -3'
miRNA:   3'- gaCGUGugGa--AGGUGC-UGa-------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 128246 0.67 0.856753
Target:  5'- gCUGCGCACgg-CCcuGCuGGCgcCCGCCCg -3'
miRNA:   3'- -GACGUGUGgaaGG--UG-CUGauGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 69120 0.76 0.380482
Target:  5'- uCUGCGggcgaGCCgcggUCCACGGCgGCCGCCUu -3'
miRNA:   3'- -GACGUg----UGGa---AGGUGCUGaUGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 72884 0.73 0.537409
Target:  5'- gUGCACGCC-UCCGCGACggagcucuuCCaGUCCg -3'
miRNA:   3'- gACGUGUGGaAGGUGCUGau-------GG-CGGG- -5'
25699 5' -55.5 NC_005337.1 + 93939 0.72 0.577822
Target:  5'- -cGUGCACCUUCUACGugUucgcguucucGCUGUCCc -3'
miRNA:   3'- gaCGUGUGGAAGGUGCugA----------UGGCGGG- -5'
25699 5' -55.5 NC_005337.1 + 18779 0.72 0.608565
Target:  5'- -gGCGCACCUgacgUCCACGGCc-CCGUgCg -3'
miRNA:   3'- gaCGUGUGGA----AGGUGCUGauGGCGgG- -5'
25699 5' -55.5 NC_005337.1 + 99355 0.71 0.660053
Target:  5'- -cGC-CACCUUCaaaaACGGCUgcaucuacgucaACCGCCUg -3'
miRNA:   3'- gaCGuGUGGAAGg---UGCUGA------------UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.