miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
257 5' -57.2 AC_000008.1 + 23804 0.66 0.449205
Target:  5'- gGUGugCgCGGCACCAgCGc-GUCUUg -3'
miRNA:   3'- aCGCugG-GCCGUGGUgGCauCAGAAa -5'
257 5' -57.2 AC_000008.1 + 16920 0.67 0.419465
Target:  5'- gUGCGua--GGCGCCACCGUGGgguuUCUa- -3'
miRNA:   3'- -ACGCugggCCGUGGUGGCAUC----AGAaa -5'
257 5' -57.2 AC_000008.1 + 27106 0.67 0.419465
Target:  5'- aGCGgccacACCCGGCGCCAgcacCUGUcGUCa-- -3'
miRNA:   3'- aCGC-----UGGGCCGUGGU----GGCAuCAGaaa -5'
257 5' -57.2 AC_000008.1 + 23558 0.67 0.400314
Target:  5'- aGCGccGCCC-GCACCGCCG-GGUCc-- -3'
miRNA:   3'- aCGC--UGGGcCGUGGUGGCaUCAGaaa -5'
257 5' -57.2 AC_000008.1 + 23507 0.67 0.381729
Target:  5'- -aUGACCUGGCGCCAgucguCCGUGGagUUa -3'
miRNA:   3'- acGCUGGGCCGUGGU-----GGCAUCagAAa -5'
257 5' -57.2 AC_000008.1 + 27352 0.68 0.346326
Target:  5'- cGCGGCCCaccgcccgccGcGCGgUACCGUAGUCg-- -3'
miRNA:   3'- aCGCUGGG----------C-CGUgGUGGCAUCAGaaa -5'
257 5' -57.2 AC_000008.1 + 17022 0.68 0.329527
Target:  5'- gGUGACuuGGCACCcACCGUGcagCUg- -3'
miRNA:   3'- aCGCUGggCCGUGG-UGGCAUca-GAaa -5'
257 5' -57.2 AC_000008.1 + 16192 0.69 0.321356
Target:  5'- cGcCGACCCGGCACUGCCGc------- -3'
miRNA:   3'- aC-GCUGGGCCGUGGUGGCaucagaaa -5'
257 5' -57.2 AC_000008.1 + 719 0.69 0.290196
Target:  5'- gGUcACgCCGGCAUgGCCGUAGUCc-- -3'
miRNA:   3'- aCGcUG-GGCCGUGgUGGCAUCAGaaa -5'
257 5' -57.2 AC_000008.1 + 11198 0.7 0.268415
Target:  5'- cGCcgGGCCCGGCACUACC-UGGaCUUg -3'
miRNA:   3'- aCG--CUGGGCCGUGGUGGcAUCaGAAa -5'
257 5' -57.2 AC_000008.1 + 24692 0.7 0.261454
Target:  5'- gUGCcgGGCCCGGCGCCGCgGgGGUUc-- -3'
miRNA:   3'- -ACG--CUGGGCCGUGGUGgCaUCAGaaa -5'
257 5' -57.2 AC_000008.1 + 16750 1.06 0.000552
Target:  5'- uUGCGACCCGGCACCACCGUAGUCUUUa -3'
miRNA:   3'- -ACGCUGGGCCGUGGUGGCAUCAGAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.