miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 3' -62.9 NC_005337.1 + 60883 0.67 0.525376
Target:  5'- cGuCCGGCGUUU-CGUcGGGCGUGuGUGc -3'
miRNA:   3'- cC-GGCCGCGAGuGCGuCCCGCAC-CAC- -5'
25701 3' -62.9 NC_005337.1 + 3126 0.67 0.515942
Target:  5'- cGGCCGGC-CUCGCGUccAGcGCGcGGUc -3'
miRNA:   3'- -CCGGCCGcGAGUGCG--UCcCGCaCCAc -5'
25701 3' -62.9 NC_005337.1 + 65530 0.67 0.515942
Target:  5'- cGGCCGGUGCUggaggcgcacugUGCGCAgcacGGGCGUcucGGc- -3'
miRNA:   3'- -CCGGCCGCGA------------GUGCGU----CCCGCA---CCac -5'
25701 3' -62.9 NC_005337.1 + 111212 0.67 0.506578
Target:  5'- cGGCCGccGCGUUCcgGCGCGcGGCGUGcGUc -3'
miRNA:   3'- -CCGGC--CGCGAG--UGCGUcCCGCAC-CAc -5'
25701 3' -62.9 NC_005337.1 + 122368 0.67 0.506578
Target:  5'- uGCUGGgcaGCUUcuggaucuccaACGCGGGGCaGUGGUa -3'
miRNA:   3'- cCGGCCg--CGAG-----------UGCGUCCCG-CACCAc -5'
25701 3' -62.9 NC_005337.1 + 96276 0.67 0.497286
Target:  5'- uGCCGGCGUUC-C-CGGcGGCGUuggGGUGc -3'
miRNA:   3'- cCGGCCGCGAGuGcGUC-CCGCA---CCAC- -5'
25701 3' -62.9 NC_005337.1 + 56303 0.67 0.497286
Target:  5'- cGGCCGcUGCUCGagaucuCGCAGGaGCGcuucgUGGUGc -3'
miRNA:   3'- -CCGGCcGCGAGU------GCGUCC-CGC-----ACCAC- -5'
25701 3' -62.9 NC_005337.1 + 39636 0.67 0.496361
Target:  5'- gGGCCauguacacgcagcGGCGCggcCGCGUGGGGCGcgUGGc- -3'
miRNA:   3'- -CCGG-------------CCGCGa--GUGCGUCCCGC--ACCac -5'
25701 3' -62.9 NC_005337.1 + 102657 0.67 0.488072
Target:  5'- cGCCcGCGC-CAUGCAGGGCGg---- -3'
miRNA:   3'- cCGGcCGCGaGUGCGUCCCGCaccac -5'
25701 3' -62.9 NC_005337.1 + 105162 0.68 0.478939
Target:  5'- uGCUGGCGCU---GCAcGGCGUGGUc -3'
miRNA:   3'- cCGGCCGCGAgugCGUcCCGCACCAc -5'
25701 3' -62.9 NC_005337.1 + 57657 0.68 0.469891
Target:  5'- uGCCgGGCGC-CGCGaacaAGGGCaaGGUGa -3'
miRNA:   3'- cCGG-CCGCGaGUGCg---UCCCGcaCCAC- -5'
25701 3' -62.9 NC_005337.1 + 9799 0.68 0.469891
Target:  5'- aGGgCGGCGUUCACcaugucCAGGGCGgaUGaGUGc -3'
miRNA:   3'- -CCgGCCGCGAGUGc-----GUCCCGC--AC-CAC- -5'
25701 3' -62.9 NC_005337.1 + 19626 0.68 0.452062
Target:  5'- aGGCCcGCGUUCAC-CGGGGggauccCGUGGUc -3'
miRNA:   3'- -CCGGcCGCGAGUGcGUCCC------GCACCAc -5'
25701 3' -62.9 NC_005337.1 + 133696 0.68 0.443287
Target:  5'- cGCCGGCgGCUucCGCGCGGccgcGGCGUacgcgcggcGGUGg -3'
miRNA:   3'- cCGGCCG-CGA--GUGCGUC----CCGCA---------CCAC- -5'
25701 3' -62.9 NC_005337.1 + 89959 0.68 0.443287
Target:  5'- cGUCGGCgaucucguugcuGCUCACGCAGGacuCGUcGGUGc -3'
miRNA:   3'- cCGGCCG------------CGAGUGCGUCCc--GCA-CCAC- -5'
25701 3' -62.9 NC_005337.1 + 133696 0.68 0.443287
Target:  5'- cGCCGGCgGCUucCGCGCGGccgcGGCGUacgcgcggcGGUGg -3'
miRNA:   3'- cCGGCCG-CGA--GUGCGUC----CCGCA---------CCAC- -5'
25701 3' -62.9 NC_005337.1 + 25689 0.68 0.434609
Target:  5'- aGG-CGGCG-UCGCGCAGGaGCG-GGUu -3'
miRNA:   3'- -CCgGCCGCgAGUGCGUCC-CGCaCCAc -5'
25701 3' -62.9 NC_005337.1 + 39945 0.69 0.417552
Target:  5'- cGGCgGGCGcCUCGCGC-GGGCGc---- -3'
miRNA:   3'- -CCGgCCGC-GAGUGCGuCCCGCaccac -5'
25701 3' -62.9 NC_005337.1 + 38593 0.69 0.409178
Target:  5'- aGGCgUGGCGCgagCGCaGCGuGGGCGUGcUGg -3'
miRNA:   3'- -CCG-GCCGCGa--GUG-CGU-CCCGCACcAC- -5'
25701 3' -62.9 NC_005337.1 + 60270 0.69 0.40091
Target:  5'- aGUCGGgGCagGCGCGGGG-GUGGg- -3'
miRNA:   3'- cCGGCCgCGagUGCGUCCCgCACCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.