miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25701 5' -55.8 NC_005337.1 + 116277 0.68 0.799847
Target:  5'- uGGCuCCGCCg--GUGAuCGAGGAGUa -3'
miRNA:   3'- -UCGuGGUGGacgCACUuGCUCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 75625 0.68 0.799847
Target:  5'- uGGCGCgCGuguCCcGCGUGcGCGAGGAGa- -3'
miRNA:   3'- -UCGUG-GU---GGaCGCACuUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 77189 0.68 0.790685
Target:  5'- cAGCGUCGCCgucucgcGCGUGAuccgcacgcGCGAGGGGUu -3'
miRNA:   3'- -UCGUGGUGGa------CGCACU---------UGCUCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 40934 0.68 0.790685
Target:  5'- uGCGCguCCUGCGcguUGAAgauCGAGGAcGUGa -3'
miRNA:   3'- uCGUGguGGACGC---ACUU---GCUCCU-CAC- -5'
25701 5' -55.8 NC_005337.1 + 47461 0.68 0.781377
Target:  5'- cGGaCACCuucaaguCCUGCGUcuacGACGAGGAgGUGg -3'
miRNA:   3'- -UC-GUGGu------GGACGCAc---UUGCUCCU-CAC- -5'
25701 5' -55.8 NC_005337.1 + 52693 0.68 0.781377
Target:  5'- uGCACCAuCCUG-GUGuacGCGcAGGAGUa -3'
miRNA:   3'- uCGUGGU-GGACgCACu--UGC-UCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 64143 0.68 0.781377
Target:  5'- aAGCACCugucCCUGaCGgagGGcgGCGAGGAGa- -3'
miRNA:   3'- -UCGUGGu---GGAC-GCa--CU--UGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 71913 0.68 0.762357
Target:  5'- cGCACCGCCUucgacgacaGCGUGGAcccCGAGGuGc- -3'
miRNA:   3'- uCGUGGUGGA---------CGCACUU---GCUCCuCac -5'
25701 5' -55.8 NC_005337.1 + 88393 0.68 0.762357
Target:  5'- cGCACCGCa-GCaaGGACGAGGAGc- -3'
miRNA:   3'- uCGUGGUGgaCGcaCUUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 10886 0.69 0.752664
Target:  5'- gAGCACCACgUGUGcggGGACGGGGuacAGg- -3'
miRNA:   3'- -UCGUGGUGgACGCa--CUUGCUCC---UCac -5'
25701 5' -55.8 NC_005337.1 + 45720 0.69 0.742862
Target:  5'- cGGC-CCGCCaGCGUGGcgAUGAGGAuGUa -3'
miRNA:   3'- -UCGuGGUGGaCGCACU--UGCUCCU-CAc -5'
25701 5' -55.8 NC_005337.1 + 126875 0.69 0.73296
Target:  5'- uGCACC-UCUGCGUGcucguGGCGAGGAa-- -3'
miRNA:   3'- uCGUGGuGGACGCAC-----UUGCUCCUcac -5'
25701 5' -55.8 NC_005337.1 + 84565 0.69 0.73296
Target:  5'- cGCGCgGCagcGCGUGAccGCGAGG-GUGg -3'
miRNA:   3'- uCGUGgUGga-CGCACU--UGCUCCuCAC- -5'
25701 5' -55.8 NC_005337.1 + 42421 0.69 0.726975
Target:  5'- uGCGCCGgCUucgGCGUGAgcuuccgggccgaguACGGGGAGUu -3'
miRNA:   3'- uCGUGGUgGA---CGCACU---------------UGCUCCUCAc -5'
25701 5' -55.8 NC_005337.1 + 111229 0.69 0.722968
Target:  5'- cGCGCgGCgUGCGUcacGAACGAGGAc-- -3'
miRNA:   3'- uCGUGgUGgACGCA---CUUGCUCCUcac -5'
25701 5' -55.8 NC_005337.1 + 133744 0.69 0.722968
Target:  5'- uGGCGCCggcagcuggagcGCCUGCGcc-GCGAGGAGc- -3'
miRNA:   3'- -UCGUGG------------UGGACGCacuUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 133744 0.69 0.722968
Target:  5'- uGGCGCCggcagcuggagcGCCUGCGcc-GCGAGGAGc- -3'
miRNA:   3'- -UCGUGG------------UGGACGCacuUGCUCCUCac -5'
25701 5' -55.8 NC_005337.1 + 97920 0.69 0.722968
Target:  5'- gGGcCGCCGCCcguggGCGUGAugGcGGuGUGu -3'
miRNA:   3'- -UC-GUGGUGGa----CGCACUugCuCCuCAC- -5'
25701 5' -55.8 NC_005337.1 + 34374 0.69 0.712896
Target:  5'- gAGCGCCGCCgcgGCGagccagagGAGCGuGGcGGUGc -3'
miRNA:   3'- -UCGUGGUGGa--CGCa-------CUUGCuCC-UCAC- -5'
25701 5' -55.8 NC_005337.1 + 126449 0.7 0.702753
Target:  5'- uGUACCACCgcgcgcugucGCGgagGAugGAGGaAGUGa -3'
miRNA:   3'- uCGUGGUGGa---------CGCa--CUugCUCC-UCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.