miRNA display CGI


Results 21 - 40 of 332 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 3' -60 NC_005337.1 + 32803 0.66 0.700836
Target:  5'- cAGCGCCugcGCCUGGUcCACGCACucGCg-- -3'
miRNA:   3'- -UCGCGG---CGGGUCGuGUGCGUG--UGacu -5'
25711 3' -60 NC_005337.1 + 33388 0.66 0.700836
Target:  5'- gAGCGCCGCCCcgcgaaguAGCuCugGCGgcCGCcgUGGa -3'
miRNA:   3'- -UCGCGGCGGG--------UCGuGugCGU--GUG--ACU- -5'
25711 3' -60 NC_005337.1 + 786 0.66 0.698843
Target:  5'- cGCGCCGCcgacgacgaggcagaCCAGCuccgcggagccgucCGCGCGCGCgGGc -3'
miRNA:   3'- uCGCGGCG---------------GGUCGu-------------GUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 786 0.66 0.698843
Target:  5'- cGCGCCGCcgacgacgaggcagaCCAGCuccgcggagccgucCGCGCGCGCgGGc -3'
miRNA:   3'- uCGCGGCG---------------GGUCGu-------------GUGCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 16018 0.66 0.69085
Target:  5'- cGCGCgGCCggcaGGUACACGCGCu---- -3'
miRNA:   3'- uCGCGgCGGg---UCGUGUGCGUGugacu -5'
25711 3' -60 NC_005337.1 + 73165 0.66 0.69085
Target:  5'- gGGCG-CGCCguGCGCAaguucuCGUACACgGAc -3'
miRNA:   3'- -UCGCgGCGGguCGUGU------GCGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 48390 0.66 0.69085
Target:  5'- cGCGCCuUCgAGC-CGCGCACGgaGAc -3'
miRNA:   3'- uCGCGGcGGgUCGuGUGCGUGUgaCU- -5'
25711 3' -60 NC_005337.1 + 109426 0.66 0.69085
Target:  5'- cGCGaccaCGUCCucgAGCACGCGC-CGCUcGAg -3'
miRNA:   3'- uCGCg---GCGGG---UCGUGUGCGuGUGA-CU- -5'
25711 3' -60 NC_005337.1 + 90217 0.66 0.69085
Target:  5'- cAGCGCCGCCagcuuGCAgAgGUACuCUGu -3'
miRNA:   3'- -UCGCGGCGGgu---CGUgUgCGUGuGACu -5'
25711 3' -60 NC_005337.1 + 37173 0.66 0.69085
Target:  5'- gAGCGCCacugcgGCaCCAGCAUGCgguuggGCACGCaGAc -3'
miRNA:   3'- -UCGCGG------CG-GGUCGUGUG------CGUGUGaCU- -5'
25711 3' -60 NC_005337.1 + 52479 0.66 0.69085
Target:  5'- cGGCGcCCGCgagagCCGGCuCAUGCGCGCc-- -3'
miRNA:   3'- -UCGC-GGCG-----GGUCGuGUGCGUGUGacu -5'
25711 3' -60 NC_005337.1 + 14430 0.66 0.69085
Target:  5'- cGUGCCGCCgCuGGCGCcggguaccgaGCGcCGCGCUGc -3'
miRNA:   3'- uCGCGGCGG-G-UCGUG----------UGC-GUGUGACu -5'
25711 3' -60 NC_005337.1 + 52592 0.66 0.69085
Target:  5'- cGGCGCUgGCggccaagcagagCCAGCACAUGCAgCACa-- -3'
miRNA:   3'- -UCGCGG-CG------------GGUCGUGUGCGU-GUGacu -5'
25711 3' -60 NC_005337.1 + 12348 0.66 0.69085
Target:  5'- cAGCGCCGUCCGuccGCGgACGUcgcgGCGCg-- -3'
miRNA:   3'- -UCGCGGCGGGU---CGUgUGCG----UGUGacu -5'
25711 3' -60 NC_005337.1 + 56812 0.66 0.69085
Target:  5'- cGCGUCGCC--GCGCACGC-CACc-- -3'
miRNA:   3'- uCGCGGCGGguCGUGUGCGuGUGacu -5'
25711 3' -60 NC_005337.1 + 8989 0.66 0.69085
Target:  5'- gGGCGCCGCauaGGCAUGCauccuguccuggGCACGCa-- -3'
miRNA:   3'- -UCGCGGCGgg-UCGUGUG------------CGUGUGacu -5'
25711 3' -60 NC_005337.1 + 10048 0.66 0.69085
Target:  5'- aGGCGCCGcCCCAGaACuCGCAgUACUcGGa -3'
miRNA:   3'- -UCGCGGC-GGGUCgUGuGCGU-GUGA-CU- -5'
25711 3' -60 NC_005337.1 + 38958 0.66 0.687845
Target:  5'- cGCGCaccgaucggCGCCCgAGUGCGCGUgcgucaccggccggGCGCUGGg -3'
miRNA:   3'- uCGCG---------GCGGG-UCGUGUGCG--------------UGUGACU- -5'
25711 3' -60 NC_005337.1 + 120430 0.66 0.684835
Target:  5'- aGGCGgagcucaCGCCCcccgagucccugcggGGCGCgcucgaGCGCGCGCUGGa -3'
miRNA:   3'- -UCGCg------GCGGG---------------UCGUG------UGCGUGUGACU- -5'
25711 3' -60 NC_005337.1 + 80499 0.66 0.680816
Target:  5'- uGCGCCccgcgGCCgGGgGCGgGCACGCcGAg -3'
miRNA:   3'- uCGCGG-----CGGgUCgUGUgCGUGUGaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.