miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25711 5' -53.1 NC_005337.1 + 119969 0.66 0.953957
Target:  5'- -----cCUCgaGCGCGcGCUGAGCCUGUa -3'
miRNA:   3'- cuaguaGAG--CGUGCaCGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 130459 0.67 0.949351
Target:  5'- -cUCGUCgacCugGUGCUGAgcaagguGCCCGUc -3'
miRNA:   3'- cuAGUAGagcGugCACGACU-------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 103209 0.67 0.940695
Target:  5'- cGAUCGUggaCGCcuuCGUGCUGGACaugcgucgCCGCa -3'
miRNA:   3'- -CUAGUAga-GCGu--GCACGACUUG--------GGCG- -5'
25711 5' -53.1 NC_005337.1 + 66491 0.67 0.940695
Target:  5'- aGGUCgGUCUgGCgaGCGUGgUGGuGCCCGUg -3'
miRNA:   3'- -CUAG-UAGAgCG--UGCACgACU-UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 79580 0.67 0.940214
Target:  5'- cGAUCuuguUgUCGCcgagcuucaGCGUGCUGAAggugcgcUCCGCg -3'
miRNA:   3'- -CUAGu---AgAGCG---------UGCACGACUU-------GGGCG- -5'
25711 5' -53.1 NC_005337.1 + 128239 0.67 0.935777
Target:  5'- uGAUgGggCUgCGCACGgcccUGCUGGcGCCCGCc -3'
miRNA:   3'- -CUAgUa-GA-GCGUGC----ACGACU-UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 40717 0.67 0.935777
Target:  5'- gGAUUccCUCGUggGUGCgccGGACUCGCg -3'
miRNA:   3'- -CUAGuaGAGCGugCACGa--CUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 128502 0.67 0.935777
Target:  5'- --gCGUCgcguacguggUCGCGCG-GCUGccGCCCGCc -3'
miRNA:   3'- cuaGUAG----------AGCGUGCaCGACu-UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 7994 0.67 0.935777
Target:  5'- cGAUUAUCU-GCGCGUGCgUGGcuaUCGCg -3'
miRNA:   3'- -CUAGUAGAgCGUGCACG-ACUug-GGCG- -5'
25711 5' -53.1 NC_005337.1 + 115427 0.67 0.935271
Target:  5'- uAUCAUgCg-GCGCGUGCUGGcgauagaGCCgGCg -3'
miRNA:   3'- cUAGUA-GagCGUGCACGACU-------UGGgCG- -5'
25711 5' -53.1 NC_005337.1 + 73439 0.67 0.930608
Target:  5'- aGAUCGUgcgccaguucUUCGCGCG-GC-GGugCCGCg -3'
miRNA:   3'- -CUAGUA----------GAGCGUGCaCGaCUugGGCG- -5'
25711 5' -53.1 NC_005337.1 + 48142 0.67 0.930608
Target:  5'- aGAUgGcCUCGUACGUGgacGAGcCCCGCg -3'
miRNA:   3'- -CUAgUaGAGCGUGCACga-CUU-GGGCG- -5'
25711 5' -53.1 NC_005337.1 + 67935 0.67 0.930608
Target:  5'- uGGUCGcgCUCcacgaGCACGUGUcGccAGCCCGCg -3'
miRNA:   3'- -CUAGUa-GAG-----CGUGCACGaC--UUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 13001 0.67 0.930608
Target:  5'- ---uGUCUCGguCGUGCa-GGCCUGCg -3'
miRNA:   3'- cuagUAGAGCguGCACGacUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 52491 0.67 0.930608
Target:  5'- -cUCGUCggcgaGCugGUGUuccUGAACCgGCu -3'
miRNA:   3'- cuAGUAGag---CGugCACG---ACUUGGgCG- -5'
25711 5' -53.1 NC_005337.1 + 12052 0.67 0.930608
Target:  5'- cGGUCGUCcggCGUGCGcGCcGAcacguccgcGCCCGCg -3'
miRNA:   3'- -CUAGUAGa--GCGUGCaCGaCU---------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 107426 0.67 0.930608
Target:  5'- -uUCAUCcagCGCACcgagaaGCUGGACUCGUa -3'
miRNA:   3'- cuAGUAGa--GCGUGca----CGACUUGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 58828 0.67 0.927385
Target:  5'- aGAUCGUCgggCGCGcCGUGCggcucaacagccacGAgaugacGCCCGCc -3'
miRNA:   3'- -CUAGUAGa--GCGU-GCACGa-------------CU------UGGGCG- -5'
25711 5' -53.1 NC_005337.1 + 24531 0.68 0.919511
Target:  5'- -----cCUCGCggACGUGCUGcGCaCCGCc -3'
miRNA:   3'- cuaguaGAGCG--UGCACGACuUG-GGCG- -5'
25711 5' -53.1 NC_005337.1 + 29644 0.68 0.919511
Target:  5'- uGAUCAcgggCUCcgagauGCGCGUGCU---CCCGCg -3'
miRNA:   3'- -CUAGUa---GAG------CGUGCACGAcuuGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.