Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25712 | 5' | -58.8 | NC_005337.1 | + | 16192 | 1.07 | 0.001775 |
Target: 5'- gCCGGAGAGCCCCGAGGAGCUCUACAAc -3' miRNA: 3'- -GGCCUCUCGGGGCUCCUCGAGAUGUU- -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 39171 | 0.73 | 0.338601 |
Target: 5'- aCCGcGAGcGCCUCGAGGAGUUCcucgACGAu -3' miRNA: 3'- -GGC-CUCuCGGGGCUCCUCGAGa---UGUU- -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 133755 | 0.71 | 0.446952 |
Target: 5'- gCUGGAGcgccugcGCCgCGAGGAGCUCUGa-- -3' miRNA: 3'- -GGCCUCu------CGGgGCUCCUCGAGAUguu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 133755 | 0.71 | 0.446952 |
Target: 5'- gCUGGAGcgccugcGCCgCGAGGAGCUCUGa-- -3' miRNA: 3'- -GGCCUCu------CGGgGCUCCUCGAGAUguu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 131751 | 0.69 | 0.572008 |
Target: 5'- cCCGGAcguccGGGCCuCCGAGGuGCggcagCUGCu- -3' miRNA: 3'- -GGCCU-----CUCGG-GGCUCCuCGa----GAUGuu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 66046 | 0.69 | 0.572008 |
Target: 5'- gUGGAgGAGCCCCaGGGGAGCgaccGCAu -3' miRNA: 3'- gGCCU-CUCGGGG-CUCCUCGaga-UGUu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 53929 | 0.69 | 0.60231 |
Target: 5'- aCGGuGcGGCCaUCGGGGAGUUCUGCu- -3' miRNA: 3'- gGCCuC-UCGG-GGCUCCUCGAGAUGuu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 68188 | 0.68 | 0.612464 |
Target: 5'- cCCuGAGcgcGGCCCCGGGGGcGCcgCUGCGGg -3' miRNA: 3'- -GGcCUC---UCGGGGCUCCU-CGa-GAUGUU- -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 75613 | 0.67 | 0.673425 |
Target: 5'- cCUGGGGAGCgCCGAGGAcGCgcggGCc- -3' miRNA: 3'- -GGCCUCUCGgGGCUCCU-CGaga-UGuu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 22002 | 0.67 | 0.673425 |
Target: 5'- aCGGGGAGCCcauCCGGgacauGGAGCUCg---- -3' miRNA: 3'- gGCCUCUCGG---GGCU-----CCUCGAGauguu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 58227 | 0.67 | 0.693566 |
Target: 5'- gCUGGAGgaGGCCgCCGAggaGGAGUUCUAgGc -3' miRNA: 3'- -GGCCUC--UCGG-GGCU---CCUCGAGAUgUu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 46515 | 0.67 | 0.703565 |
Target: 5'- gCCGGAGuucGGCUCCuucGAGGAGCcCaGCGAc -3' miRNA: 3'- -GGCCUC---UCGGGG---CUCCUCGaGaUGUU- -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 27958 | 0.67 | 0.713505 |
Target: 5'- gCCGGuucgaGGAGCaCCgGAaccuGGAGCUgUGCAAg -3' miRNA: 3'- -GGCC-----UCUCG-GGgCU----CCUCGAgAUGUU- -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 91703 | 0.67 | 0.713505 |
Target: 5'- aCGGAGAGCCCCGcGGc-CUCcagccGCAGc -3' miRNA: 3'- gGCCUCUCGGGGCuCCucGAGa----UGUU- -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 96930 | 0.67 | 0.713505 |
Target: 5'- gCGGAaacAGCCCCGcGGAGUUCcacccgUGCAAg -3' miRNA: 3'- gGCCUc--UCGGGGCuCCUCGAG------AUGUU- -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 18693 | 0.67 | 0.723376 |
Target: 5'- gUCGGAGAcagcagcucggGCCCCggcGAGGAGCUgcgGCGc -3' miRNA: 3'- -GGCCUCU-----------CGGGG---CUCCUCGAga-UGUu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 94461 | 0.67 | 0.723376 |
Target: 5'- gCGGAGcAGCUCCGGGucGCUCggccGCAc -3' miRNA: 3'- gGCCUC-UCGGGGCUCcuCGAGa---UGUu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 132388 | 0.66 | 0.729262 |
Target: 5'- gCGGAGucguaccGGCCCCggcccgcgaucuucGAGGAGCUCa---- -3' miRNA: 3'- gGCCUC-------UCGGGG--------------CUCCUCGAGauguu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 116071 | 0.66 | 0.742877 |
Target: 5'- aCGGAcGGGCUCUGcacGGAGCgCUACAc -3' miRNA: 3'- gGCCU-CUCGGGGCu--CCUCGaGAUGUu -5' |
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25712 | 5' | -58.8 | NC_005337.1 | + | 133469 | 0.66 | 0.752488 |
Target: 5'- gCGGAcGGCUCCGcGGAGCuggUCUGCc- -3' miRNA: 3'- gGCCUcUCGGGGCuCCUCG---AGAUGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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