miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25716 5' -59.9 NC_005337.1 + 80287 0.66 0.735797
Target:  5'- -gCGCAgCGCCACCaggugcuugacGAGCcCCGCGAa- -3'
miRNA:   3'- cgGCGU-GUGGUGG-----------CUCGaGGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 42648 0.66 0.767536
Target:  5'- cCCGCACAUCcUCGGGCcgcccgagaucggcuUCCGCGcccGGa -3'
miRNA:   3'- cGGCGUGUGGuGGCUCG---------------AGGCGCu--CC- -5'
25716 5' -59.9 NC_005337.1 + 98019 0.66 0.735797
Target:  5'- gGUCGCGCugGCCACCGAcggGCugggguucgUCCGgGAGc -3'
miRNA:   3'- -CGGCGUG--UGGUGGCU---CG---------AGGCgCUCc -5'
25716 5' -59.9 NC_005337.1 + 96842 0.66 0.715682
Target:  5'- aGCCGCgGCGuggcguuCCcCCG-GCUCCGCGAc- -3'
miRNA:   3'- -CGGCG-UGU-------GGuGGCuCGAGGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 95609 0.66 0.72626
Target:  5'- aGCaGCGCGCCAUgGcGGCgUCCGUGGGc -3'
miRNA:   3'- -CGgCGUGUGGUGgC-UCG-AGGCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 99722 0.66 0.72626
Target:  5'- cGUCGCGgAcaggacgcucucCCGCCG-GCUaCGCGAGGc -3'
miRNA:   3'- -CGGCGUgU------------GGUGGCuCGAgGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 95060 0.66 0.716647
Target:  5'- uGUCGCGCACgC-CCGGGUccgggUCCGCGuAGc -3'
miRNA:   3'- -CGGCGUGUG-GuGGCUCG-----AGGCGC-UCc -5'
25716 5' -59.9 NC_005337.1 + 65703 0.66 0.716647
Target:  5'- cGUCgGUGC-UgGCCGAGCUCCGCGccauGGc -3'
miRNA:   3'- -CGG-CGUGuGgUGGCUCGAGGCGCu---CC- -5'
25716 5' -59.9 NC_005337.1 + 63102 0.66 0.72626
Target:  5'- gGCCcCGUGCCACCGAGC-CCaGCGAc- -3'
miRNA:   3'- -CGGcGUGUGGUGGCUCGaGG-CGCUcc -5'
25716 5' -59.9 NC_005337.1 + 59223 0.66 0.716647
Target:  5'- gGCCGCggACACCGaccucuCCGccaagcAGUUCUGCGAGu -3'
miRNA:   3'- -CGGCG--UGUGGU------GGC------UCGAGGCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 49518 0.66 0.716647
Target:  5'- aGCUacaaGCACACCAUCGcGCgCgCGCGGGa -3'
miRNA:   3'- -CGG----CGUGUGGUGGCuCGaG-GCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 35459 0.66 0.716647
Target:  5'- uGCCGgACGCCcuCCaGAGCUgCUGCaugcaGAGGa -3'
miRNA:   3'- -CGGCgUGUGGu-GG-CUCGA-GGCG-----CUCC- -5'
25716 5' -59.9 NC_005337.1 + 112764 0.66 0.716647
Target:  5'- uUCGUccgGCCugCG-GCUCCGCGAGc -3'
miRNA:   3'- cGGCGug-UGGugGCuCGAGGCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 110080 0.66 0.735797
Target:  5'- -aCGCGCGCCucGCCGguaacggcgcgaGGCUgcgcguccauuaCUGCGAGGg -3'
miRNA:   3'- cgGCGUGUGG--UGGC------------UCGA------------GGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 73790 0.66 0.716647
Target:  5'- aCCGUGCAgCCGCaCGAGCUCaCGCu--- -3'
miRNA:   3'- cGGCGUGU-GGUG-GCUCGAG-GCGcucc -5'
25716 5' -59.9 NC_005337.1 + 29743 0.66 0.716647
Target:  5'- uGCgGCGgACCagcggGCCGGGCUCCuCGAa- -3'
miRNA:   3'- -CGgCGUgUGG-----UGGCUCGAGGcGCUcc -5'
25716 5' -59.9 NC_005337.1 + 44443 0.66 0.734847
Target:  5'- cGCCGCcggaggacgucgaGCGCCucGCCGAGCUggaggCCaguuCGAGGc -3'
miRNA:   3'- -CGGCG-------------UGUGG--UGGCUCGA-----GGc---GCUCC- -5'
25716 5' -59.9 NC_005337.1 + 66638 0.66 0.716647
Target:  5'- aGCaCGCGCGCgACC-AGCugcugUCCGUGAuGGa -3'
miRNA:   3'- -CG-GCGUGUGgUGGcUCG-----AGGCGCU-CC- -5'
25716 5' -59.9 NC_005337.1 + 64205 0.66 0.735797
Target:  5'- gGUCGCGCACgAguUCGcGgUCCGCGAcGGg -3'
miRNA:   3'- -CGGCGUGUGgU--GGCuCgAGGCGCU-CC- -5'
25716 5' -59.9 NC_005337.1 + 128161 0.66 0.72626
Target:  5'- -aCGCACGCCGCUGcacGUggCCGCGAc- -3'
miRNA:   3'- cgGCGUGUGGUGGCu--CGa-GGCGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.