miRNA display CGI


Results 1 - 20 of 347 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25716 5' -59.9 NC_005337.1 + 13713 1.12 0.000837
Target:  5'- uGCCGCACACCACCGAGCUCCGCGAGGa -3'
miRNA:   3'- -CGGCGUGUGGUGGCUCGAGGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 1133 0.85 0.064293
Target:  5'- aGCaCGCGCGCgACC-AGCUCCGCGGGGa -3'
miRNA:   3'- -CG-GCGUGUGgUGGcUCGAGGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 1133 0.85 0.064293
Target:  5'- aGCaCGCGCGCgACC-AGCUCCGCGGGGa -3'
miRNA:   3'- -CG-GCGUGUGgUGGcUCGAGGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 781 0.83 0.086441
Target:  5'- uGCUGCGCGCCGCCGAcgacgaggcagaccaGCUCCGCGGa- -3'
miRNA:   3'- -CGGCGUGUGGUGGCU---------------CGAGGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 781 0.83 0.086441
Target:  5'- uGCUGCGCGCCGCCGAcgacgaggcagaccaGCUCCGCGGa- -3'
miRNA:   3'- -CGGCGUGUGGUGGCU---------------CGAGGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 99536 0.82 0.094834
Target:  5'- gGCCcgGUGCGCCGCCGAcuGCUCgCGCGAGGa -3'
miRNA:   3'- -CGG--CGUGUGGUGGCU--CGAG-GCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 24542 0.8 0.135332
Target:  5'- uGCUGCGCACCGCCGAcuGCUCgGCGuuccGGc -3'
miRNA:   3'- -CGGCGUGUGGUGGCU--CGAGgCGCu---CC- -5'
25716 5' -59.9 NC_005337.1 + 88260 0.79 0.145876
Target:  5'- uGCCgGCGCGCCGgCGGGCgCCGCgGAGGa -3'
miRNA:   3'- -CGG-CGUGUGGUgGCUCGaGGCG-CUCC- -5'
25716 5' -59.9 NC_005337.1 + 124768 0.79 0.156388
Target:  5'- gGCCGCAUggugacgGCCAUCGAGCUCUGCGcgcagauGGGc -3'
miRNA:   3'- -CGGCGUG-------UGGUGGCUCGAGGCGC-------UCC- -5'
25716 5' -59.9 NC_005337.1 + 21929 0.78 0.173442
Target:  5'- gGCCGCGCGcuCCGCCGAGCU-CGCGGa- -3'
miRNA:   3'- -CGGCGUGU--GGUGGCUCGAgGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 103635 0.78 0.173442
Target:  5'- cGCCGCGCGCCAUCcucGGCUgCGCGcAGGc -3'
miRNA:   3'- -CGGCGUGUGGUGGc--UCGAgGCGC-UCC- -5'
25716 5' -59.9 NC_005337.1 + 25084 0.78 0.182132
Target:  5'- aGCUGCGCGaCGCCGAGCUCCGCc--- -3'
miRNA:   3'- -CGGCGUGUgGUGGCUCGAGGCGcucc -5'
25716 5' -59.9 NC_005337.1 + 55865 0.78 0.186168
Target:  5'- aGCCGCcauggAgGCCACCGAuGCgugcggcgcagcaUCCGCGAGGg -3'
miRNA:   3'- -CGGCG-----UgUGGUGGCU-CG-------------AGGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 46463 0.77 0.19589
Target:  5'- cGCgGCGCGCCGgCGAGCUCC-CGGGc -3'
miRNA:   3'- -CGgCGUGUGGUgGCUCGAGGcGCUCc -5'
25716 5' -59.9 NC_005337.1 + 75291 0.77 0.210547
Target:  5'- -gCGCGCguaGCgACCGAGCUCCGCcAGGa -3'
miRNA:   3'- cgGCGUG---UGgUGGCUCGAGGCGcUCC- -5'
25716 5' -59.9 NC_005337.1 + 76356 0.77 0.215639
Target:  5'- uGCCGUugACCAgCGGGauguuCUUCGCGAGGu -3'
miRNA:   3'- -CGGCGugUGGUgGCUC-----GAGGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 26062 0.76 0.226139
Target:  5'- gGCuCGCACGCCACCGcaauguAGCgcggCGCGGGGa -3'
miRNA:   3'- -CG-GCGUGUGGUGGC------UCGag--GCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 77385 0.76 0.23707
Target:  5'- uGCCGCaACACCAgCCG-GCgCCGCGGGa -3'
miRNA:   3'- -CGGCG-UGUGGU-GGCuCGaGGCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 75260 0.76 0.23707
Target:  5'- gGCCGCGCGcacccacuCCAgCGAGCUCCGCuuGAGc -3'
miRNA:   3'- -CGGCGUGU--------GGUgGCUCGAGGCG--CUCc -5'
25716 5' -59.9 NC_005337.1 + 124635 0.76 0.248439
Target:  5'- gGCUGCuCAgCAUCGcGCUCUGCGAGGu -3'
miRNA:   3'- -CGGCGuGUgGUGGCuCGAGGCGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.