miRNA display CGI


Results 21 - 40 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25716 5' -59.9 NC_005337.1 + 11521 0.66 0.745249
Target:  5'- cGCCGgGCagcgcagggugGCCGCCaGGUcgUCCGCGGGc -3'
miRNA:   3'- -CGGCgUG-----------UGGUGGcUCG--AGGCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 49698 0.66 0.745249
Target:  5'- aCC-CACACCAgcgccCCGGGCUCgGCGcgccgguugagcGGGa -3'
miRNA:   3'- cGGcGUGUGGU-----GGCUCGAGgCGC------------UCC- -5'
25716 5' -59.9 NC_005337.1 + 101492 0.66 0.745249
Target:  5'- cGCUGCucGCGCUcauGCgCGAgcGCUCCGCGcGGc -3'
miRNA:   3'- -CGGCG--UGUGG---UG-GCU--CGAGGCGCuCC- -5'
25716 5' -59.9 NC_005337.1 + 40845 0.66 0.745249
Target:  5'- aGCCGCACGggacacgcgUCGCCGuGCccCCGgugcaGAGGg -3'
miRNA:   3'- -CGGCGUGU---------GGUGGCuCGa-GGCg----CUCC- -5'
25716 5' -59.9 NC_005337.1 + 61288 0.66 0.745249
Target:  5'- cGCCGCGCGCCAUcaugaaCGAGaccaggaagUCCGCGc-- -3'
miRNA:   3'- -CGGCGUGUGGUG------GCUCg--------AGGCGCucc -5'
25716 5' -59.9 NC_005337.1 + 120219 0.66 0.745249
Target:  5'- cGCCGaggcggacaGCAUCGCCGAGCagUGCGuGu -3'
miRNA:   3'- -CGGCg--------UGUGGUGGCUCGagGCGCuCc -5'
25716 5' -59.9 NC_005337.1 + 94307 0.66 0.745249
Target:  5'- cGCCGuCGCGCuCGaaugcgUCGAGCgccCgCGCGAGGc -3'
miRNA:   3'- -CGGC-GUGUG-GU------GGCUCGa--G-GCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 59167 0.66 0.745249
Target:  5'- cGCCGCGCuggUCACCGuccgcaagGGCUuccuggagaCCGgGGGGa -3'
miRNA:   3'- -CGGCGUGu--GGUGGC--------UCGA---------GGCgCUCC- -5'
25716 5' -59.9 NC_005337.1 + 33656 0.66 0.745249
Target:  5'- cGCaGUACACCACCuuGGC-CaGCGAGGc -3'
miRNA:   3'- -CGgCGUGUGGUGGc-UCGaGgCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 70015 0.66 0.745249
Target:  5'- cGgCGCGCccgggucccagaGCCGCCGcAGCgCCGCaaaGAGGc -3'
miRNA:   3'- -CgGCGUG------------UGGUGGC-UCGaGGCG---CUCC- -5'
25716 5' -59.9 NC_005337.1 + 50193 0.66 0.745249
Target:  5'- gGCCGCAacccucuggcucCGCCGCCcugcGcCUCCcCGAGGg -3'
miRNA:   3'- -CGGCGU------------GUGGUGGcu--C-GAGGcGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 61778 0.66 0.745249
Target:  5'- cGUgGUACACCACCucGGGCaugUCCGUGuccGGc -3'
miRNA:   3'- -CGgCGUGUGGUGG--CUCG---AGGCGCu--CC- -5'
25716 5' -59.9 NC_005337.1 + 98398 0.66 0.745249
Target:  5'- uCCGCGCACaCGucCCGcAGUUCCGCGc-- -3'
miRNA:   3'- cGGCGUGUG-GU--GGC-UCGAGGCGCucc -5'
25716 5' -59.9 NC_005337.1 + 80676 0.66 0.744308
Target:  5'- cGCgGCGCGCUuCCGcGCgcgcaugUgCGCGAGGa -3'
miRNA:   3'- -CGgCGUGUGGuGGCuCG-------AgGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 42192 0.66 0.742423
Target:  5'- aGCUGCGCGuCCAgCCGcugccgguacagccGGUcgUCCGCGAGu -3'
miRNA:   3'- -CGGCGUGU-GGU-GGC--------------UCG--AGGCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 48400 0.66 0.742423
Target:  5'- aGCCGCGCACggagacgcucggcgUACUGGcGCUgUGCGuGGu -3'
miRNA:   3'- -CGGCGUGUG--------------GUGGCU-CGAgGCGCuCC- -5'
25716 5' -59.9 NC_005337.1 + 8393 0.66 0.739588
Target:  5'- gGCUGUGCAgCACCGuguuGUgcaggauguccgcaCCGCGGGGa -3'
miRNA:   3'- -CGGCGUGUgGUGGCu---CGa-------------GGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 98019 0.66 0.735797
Target:  5'- gGUCGCGCugGCCACCGAcggGCugggguucgUCCGgGAGc -3'
miRNA:   3'- -CGGCGUG--UGGUGGCU---CG---------AGGCgCUCc -5'
25716 5' -59.9 NC_005337.1 + 73503 0.66 0.735797
Target:  5'- gGUCGUgaagGCGgUGCUGGGCacCCGCGAGGc -3'
miRNA:   3'- -CGGCG----UGUgGUGGCUCGa-GGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 133570 0.66 0.735797
Target:  5'- gGCCGCGgGCgugCGCgCGAGCuucgccUCCGCGcgcaAGGg -3'
miRNA:   3'- -CGGCGUgUG---GUG-GCUCG------AGGCGC----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.