miRNA display CGI


Results 1 - 20 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25717 3' -58 NC_005337.1 + 120990 0.66 0.871305
Target:  5'- -uGGGU-CCGGCgaacacGGACGUCUgcuUCGugUg -3'
miRNA:   3'- ggUCCAuGGCCG------CCUGCAGG---AGCugG- -5'
25717 3' -58 NC_005337.1 + 117340 0.66 0.871305
Target:  5'- uCCAGG-GCC-GUGGuCuUCCUCGACg -3'
miRNA:   3'- -GGUCCaUGGcCGCCuGcAGGAGCUGg -5'
25717 3' -58 NC_005337.1 + 120615 0.66 0.871305
Target:  5'- -gAGGagGCCGGCaagacGGGCGUCa-CGAUCg -3'
miRNA:   3'- ggUCCa-UGGCCG-----CCUGCAGgaGCUGG- -5'
25717 3' -58 NC_005337.1 + 63449 0.66 0.871305
Target:  5'- cUCGGGcguguUCGGCuGGAUGUCgUCGAUg -3'
miRNA:   3'- -GGUCCau---GGCCG-CCUGCAGgAGCUGg -5'
25717 3' -58 NC_005337.1 + 57993 0.66 0.871305
Target:  5'- gCCAuGGccaugaaccUGCUGcGCccGGGCGUgCUCGGCCa -3'
miRNA:   3'- -GGU-CC---------AUGGC-CG--CCUGCAgGAGCUGG- -5'
25717 3' -58 NC_005337.1 + 112915 0.66 0.871305
Target:  5'- uUCGGau-CCGGgUGGuGCGUCgUCGACCu -3'
miRNA:   3'- -GGUCcauGGCC-GCC-UGCAGgAGCUGG- -5'
25717 3' -58 NC_005337.1 + 120127 0.66 0.871305
Target:  5'- cCCGGcUGCCGaaggacgagcucGCGGAcuuCGUCCgcgUGGCCa -3'
miRNA:   3'- -GGUCcAUGGC------------CGCCU---GCAGGa--GCUGG- -5'
25717 3' -58 NC_005337.1 + 46024 0.66 0.871305
Target:  5'- gCCGGcGcGCCGGCacgcacGACGUCUUCGcagcaGCCc -3'
miRNA:   3'- -GGUC-CaUGGCCGc-----CUGCAGGAGC-----UGG- -5'
25717 3' -58 NC_005337.1 + 73238 0.66 0.871305
Target:  5'- aCCAGGagccgcaacUACCuGGUGGagGCGUaCUCgGACCg -3'
miRNA:   3'- -GGUCC---------AUGG-CCGCC--UGCAgGAG-CUGG- -5'
25717 3' -58 NC_005337.1 + 33797 0.66 0.871305
Target:  5'- --uGGUG-CGGCGGuacgaGUCCUCcacgGACCg -3'
miRNA:   3'- gguCCAUgGCCGCCug---CAGGAG----CUGG- -5'
25717 3' -58 NC_005337.1 + 125066 0.66 0.871305
Target:  5'- aCGGGUacgACCGGUucuGgGUCCgCGACCg -3'
miRNA:   3'- gGUCCA---UGGCCGcc-UgCAGGaGCUGG- -5'
25717 3' -58 NC_005337.1 + 119045 0.66 0.871305
Target:  5'- gCCAGG-ACCGGUucGACcUCCUCGcggugugucgcaGCCu -3'
miRNA:   3'- -GGUCCaUGGCCGc-CUGcAGGAGC------------UGG- -5'
25717 3' -58 NC_005337.1 + 65873 0.66 0.864079
Target:  5'- aCgGGGUGCUGGCcgcGGuCG-CCgUGACCg -3'
miRNA:   3'- -GgUCCAUGGCCG---CCuGCaGGaGCUGG- -5'
25717 3' -58 NC_005337.1 + 84215 0.66 0.864079
Target:  5'- aCGGGcUGCUGuGCGGGCGcggCCUgCGGgCa -3'
miRNA:   3'- gGUCC-AUGGC-CGCCUGCa--GGA-GCUgG- -5'
25717 3' -58 NC_005337.1 + 24628 0.66 0.864079
Target:  5'- -gAGGUgacggaaaaGCUGGUGGACGcgCUcgCGGCCu -3'
miRNA:   3'- ggUCCA---------UGGCCGCCUGCa-GGa-GCUGG- -5'
25717 3' -58 NC_005337.1 + 68201 0.66 0.861134
Target:  5'- cCCGGGggcGCCGcuGCGGgcccgccugacgGCGUCCggguuccggagcgCGGCCg -3'
miRNA:   3'- -GGUCCa--UGGC--CGCC------------UGCAGGa------------GCUGG- -5'
25717 3' -58 NC_005337.1 + 5824 0.66 0.856658
Target:  5'- gCC-GGU-CCGGCGGugugaaguGCGgCCgCGACCu -3'
miRNA:   3'- -GGuCCAuGGCCGCC--------UGCaGGaGCUGG- -5'
25717 3' -58 NC_005337.1 + 26092 0.66 0.856658
Target:  5'- gCGGGgaagcGCCGcCGGAUGUCCaccgCGGCg -3'
miRNA:   3'- gGUCCa----UGGCcGCCUGCAGGa---GCUGg -5'
25717 3' -58 NC_005337.1 + 11232 0.66 0.856658
Target:  5'- gCAGGUGCaccuCGGUGcgcagcccuucGACGUCCgcggggaugugUCGGCCc -3'
miRNA:   3'- gGUCCAUG----GCCGC-----------CUGCAGG-----------AGCUGG- -5'
25717 3' -58 NC_005337.1 + 38697 0.66 0.856658
Target:  5'- gCCuGGUGUCGGCGGcggcccguCGUCCU-GACg -3'
miRNA:   3'- -GGuCCAUGGCCGCCu-------GCAGGAgCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.